Gene detail

Detailed information of OS493_029718-T1 in Lophelia pertusa

Genomic Location: scaffold_183:416246...428783
NR annotation: KAJ7377359.1, hypothetical protein OS493_029718 [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

No Swiss-Prot hit above the reporting threshold for this gene.

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0003693 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF09423 all species →	PhoD	PhoD-like phosphatase	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR018946 all species →	Domain	PhoD-like phosphatase, metallophosphatase domain	Interproscan
IPR038607 all species →	Homologous_superfamily	PhoD-like superfamily	Interproscan
IPR029052 all species →	Homologous_superfamily	Metallo-dependent phosphatase-like	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR33987 all species →	CALCINEURIN-LIKE METALLO-PHOSPHOESTERASE SUPERFAMILY PROTEIN	Interproscan

Gene Ontology

No Gene Ontology signature was detected for OS493_029718-T1. This gene does have a gene model — the search simply returned no hit.

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K01113	phoD; alkaline phosphatase D	EC:3.1.3.1	Two-component system	ko02020	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of OS493_029718-T1 across 110 RNA-seq samples of Lophelia pertusa. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

110Samples

109TPM > 0

7Conditions

81.3Max TPM

11.4Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
polyp at pH7 9	18	18	7.22	11.83
polyp at pH7 6	18	18	7.27	12.20
coral polyp · control treatment	16	16	16.89	75.46
coral polyp · oil and dispersant treatment	16	16	16.06	56.63
coral polyp · oil treatment	16	16	15.18	81.27
coral polyp · dispersant treatment	16	16	11.72	43.65
Polyp	10	9	3.03	5.12

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR11359497	polyp at pH7 9	not recorded	not recorded	not recorded	-	11.83
SRR11359520	polyp at pH7 9	not recorded	not recorded	not recorded	-	11.76
SRR11359521	polyp at pH7 9	not recorded	not recorded	not recorded	-	11.03
SRR11359519	polyp at pH7 9	not recorded	not recorded	not recorded	-	9.29
SRR11359496	polyp at pH7 9	not recorded	not recorded	not recorded	-	9.14
SRR11359518	polyp at pH7 9	not recorded	not recorded	not recorded	-	8.96
SRR11359494	polyp at pH7 9	not recorded	not recorded	not recorded	-	7.57
SRR11359523	polyp at pH7 9	not recorded	not recorded	not recorded	-	7.51
SRR11359522	polyp at pH7 9	not recorded	not recorded	not recorded	-	7.49
SRR11359495	polyp at pH7 9	not recorded	not recorded	not recorded	-	6.08
SRR11359499	polyp at pH7 9	not recorded	not recorded	not recorded	-	5.88
SRR11359498	polyp at pH7 9	not recorded	not recorded	not recorded	-	5.26
SRR11359509	polyp at pH7 9	not recorded	not recorded	not recorded	-	5.18
SRR11359507	polyp at pH7 9	not recorded	not recorded	not recorded	-	5.00
SRR11359508	polyp at pH7 9	not recorded	not recorded	not recorded	-	4.89
SRR11359506	polyp at pH7 9	not recorded	not recorded	not recorded	-	4.52
SRR11359511	polyp at pH7 9	not recorded	not recorded	not recorded	-	4.42
SRR11359510	polyp at pH7 9	not recorded	not recorded	not recorded	-	4.13
SRR11359513	polyp at pH7 6	not recorded	not recorded	not recorded	-	12.20
SRR11359501	polyp at pH7 6	not recorded	not recorded	not recorded	-	10.18
SRR11359512	polyp at pH7 6	not recorded	not recorded	not recorded	-	9.85
SRR11359524	polyp at pH7 6	not recorded	not recorded	not recorded	-	9.21
SRR11359500	polyp at pH7 6	not recorded	not recorded	not recorded	-	8.61
SRR11359527	polyp at pH7 6	not recorded	not recorded	not recorded	-	8.19
SRR11359526	polyp at pH7 6	not recorded	not recorded	not recorded	-	8.09
SRR11359515	polyp at pH7 6	not recorded	not recorded	not recorded	-	7.94
SRR11359514	polyp at pH7 6	not recorded	not recorded	not recorded	-	7.80
SRR11359525	polyp at pH7 6	not recorded	not recorded	not recorded	-	6.86
SRR11359529	polyp at pH7 6	not recorded	not recorded	not recorded	-	6.14
SRR11359505	polyp at pH7 6	not recorded	not recorded	not recorded	-	6.12
SRR11359517	polyp at pH7 6	not recorded	not recorded	not recorded	-	6.08
SRR11359528	polyp at pH7 6	not recorded	not recorded	not recorded	-	5.72
SRR11359504	polyp at pH7 6	not recorded	not recorded	not recorded	-	5.69
SRR11359516	polyp at pH7 6	not recorded	not recorded	not recorded	-	5.40
SRR11359503	polyp at pH7 6	not recorded	not recorded	not recorded	-	3.60
SRR11359502	polyp at pH7 6	not recorded	not recorded	not recorded	-	3.11
SRR16705960	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	75.46
SRR16705942	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	23.21
SRR16705974	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	21.73
SRR16705971	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	18.79
SRR16705972	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	16.05
SRR16705990	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	15.23
SRR16705965	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	15.02
SRR16705943	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	14.19
SRR16705975	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	13.21
SRR16705957	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	9.57
SRR16705991	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	9.39
SRR16705973	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	9.26
SRR16705946	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	9.25
SRR16705970	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	8.96
SRR16705989	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	6.86
SRR16705992	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	4.04
SRR16705982	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	56.63
SRR16705979	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	24.81
SRR16705978	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	21.77
SRR16705993	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	18.35
SRR16705944	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	16.71
SRR16706004	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	15.96
SRR16705996	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	15.07
SRR16705976	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	14.47
SRR16705995	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	14.20
SRR16705945	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	13.07
SRR16705947	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	9.96
SRR16706005	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	9.19
SRR16705977	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	7.98
SRR16705948	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	7.02
SRR16705994	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	6.99
SRR16705997	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	4.72
SRR16705998	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	81.27
SRR16705951	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	19.60
SRR16705983	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	16.88
SRR16705949	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	15.87
SRR16705999	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	14.19
SRR16706000	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	13.59
SRR16705961	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	12.46
SRR16705963	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	12.31
SRR16705952	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	11.32
SRR16705981	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	10.92
SRR16705962	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	6.65
SRR16705980	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	6.56
SRR16705950	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	5.90
SRR16705984	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	5.78
SRR16706001	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	5.71
SRR16705964	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	3.86
SRR16706002	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	43.65
SRR16705969	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	17.12
SRR16705956	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	13.78
SRR16705959	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	12.29
SRR16705954	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	11.90
SRR16705955	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	11.32
SRR16705986	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	11.01
SRR16705987	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	10.66
SRR16705968	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	10.44
SRR16705988	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	10.25
SRR16705958	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	9.82
SRR16705967	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	9.01
SRR16706003	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	7.27
SRR16705966	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	6.46
SRR16705985	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.97
SRR16705953	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.59
SRR7746667	Polyp	not recorded	not recorded	not recorded	-	5.12
SRR7746666	Polyp	not recorded	not recorded	not recorded	-	4.86
SRR7746668	Polyp	not recorded	not recorded	not recorded	-	4.17
SRR23025710	Polyp	not recorded	not recorded	not recorded	-	3.72
SRR23025708	Polyp	not recorded	not recorded	not recorded	-	3.54
SRR23025713	Polyp	not recorded	not recorded	not recorded	-	3.02
SRR23025711	Polyp	not recorded	not recorded	not recorded	-	2.41
SRR23025709	Polyp	not recorded	not recorded	not recorded	-	2.11
SRR23025712	Polyp	not recorded	not recorded	not recorded	-	1.37
SRR7746669	Polyp	not recorded	not recorded	not recorded	-	0.00

Source: CnidoSite RNA-seq expression matrices (LPERT_TPM, StringTie quantification over 110 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.