Gene detail

Detailed information of OS493_029725-T1 in Lophelia pertusa

Genomic Location: scaffold_183:510707...511423
NR annotation: KAJ7377366.1, hypothetical protein OS493_029725 [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
P28039	Acyloxyacyl hydrolase OS=Homo sapiens OX=9606 GN=AOAH PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0009368 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF20825 all species →	Saposin	Saposin-like domain	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR008139 all species →	Domain	Saposin B type domain	Interproscan
IPR039676 all species →	Family	Acyloxyacyl hydrolase	Interproscan
IPR048593 all species →	Domain	Acyloxyacyl hydrolase, N-terminal domain	Interproscan
IPR011001 all species →	Homologous_superfamily	Saposin-like	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR15010 all species →	ACYLOXYACYL HYDROLASE	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005509 all species →	Molecular Function	calcium ion binding	Interproscan
GO:0009104 all species →	Biological Process	lipopolysaccharide catabolic process	Interproscan
GO:0050528 all species →	Molecular Function	acyloxyacyl hydrolase activity	Interproscan
GO:0050728 all species →	Biological Process	negative regulation of inflammatory response	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for OS493_029725-T1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of OS493_029725-T1 across 110 RNA-seq samples of Lophelia pertusa. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

110Samples

109TPM > 0

7Conditions

85.8Max TPM

13.7Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
polyp at pH7 9	18	18	4.65	7.99
polyp at pH7 6	18	18	6.14	10.20
coral polyp · control treatment	16	16	11.63	22.54
coral polyp · oil and dispersant treatment	16	16	35.04	85.58
coral polyp · oil treatment	16	16	11.01	18.16
coral polyp · dispersant treatment	16	16	22.77	85.84
Polyp	10	9	2.52	5.26

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR11359523	polyp at pH7 9	not recorded	not recorded	not recorded	-	7.99
SRR11359522	polyp at pH7 9	not recorded	not recorded	not recorded	-	7.54
SRR11359495	polyp at pH7 9	not recorded	not recorded	not recorded	-	6.35
SRR11359519	polyp at pH7 9	not recorded	not recorded	not recorded	-	6.03
SRR11359518	polyp at pH7 9	not recorded	not recorded	not recorded	-	5.72
SRR11359506	polyp at pH7 9	not recorded	not recorded	not recorded	-	4.78
SRR11359510	polyp at pH7 9	not recorded	not recorded	not recorded	-	4.72
SRR11359511	polyp at pH7 9	not recorded	not recorded	not recorded	-	4.47
SRR11359498	polyp at pH7 9	not recorded	not recorded	not recorded	-	4.36
SRR11359521	polyp at pH7 9	not recorded	not recorded	not recorded	-	4.14
SRR11359520	polyp at pH7 9	not recorded	not recorded	not recorded	-	4.10
SRR11359497	polyp at pH7 9	not recorded	not recorded	not recorded	-	4.04
SRR11359494	polyp at pH7 9	not recorded	not recorded	not recorded	-	3.88
SRR11359509	polyp at pH7 9	not recorded	not recorded	not recorded	-	3.72
SRR11359508	polyp at pH7 9	not recorded	not recorded	not recorded	-	3.22
SRR11359499	polyp at pH7 9	not recorded	not recorded	not recorded	-	3.11
SRR11359507	polyp at pH7 9	not recorded	not recorded	not recorded	-	2.91
SRR11359496	polyp at pH7 9	not recorded	not recorded	not recorded	-	2.65
SRR11359529	polyp at pH7 6	not recorded	not recorded	not recorded	-	10.20
SRR11359527	polyp at pH7 6	not recorded	not recorded	not recorded	-	9.38
SRR11359528	polyp at pH7 6	not recorded	not recorded	not recorded	-	8.63
SRR11359526	polyp at pH7 6	not recorded	not recorded	not recorded	-	7.92
SRR11359505	polyp at pH7 6	not recorded	not recorded	not recorded	-	7.89
SRR11359515	polyp at pH7 6	not recorded	not recorded	not recorded	-	7.30
SRR11359504	polyp at pH7 6	not recorded	not recorded	not recorded	-	7.06
SRR11359517	polyp at pH7 6	not recorded	not recorded	not recorded	-	6.19
SRR11359516	polyp at pH7 6	not recorded	not recorded	not recorded	-	6.19
SRR11359503	polyp at pH7 6	not recorded	not recorded	not recorded	-	5.71
SRR11359514	polyp at pH7 6	not recorded	not recorded	not recorded	-	5.67
SRR11359513	polyp at pH7 6	not recorded	not recorded	not recorded	-	5.39
SRR11359502	polyp at pH7 6	not recorded	not recorded	not recorded	-	5.05
SRR11359512	polyp at pH7 6	not recorded	not recorded	not recorded	-	4.73
SRR11359525	polyp at pH7 6	not recorded	not recorded	not recorded	-	3.85
SRR11359524	polyp at pH7 6	not recorded	not recorded	not recorded	-	3.80
SRR11359500	polyp at pH7 6	not recorded	not recorded	not recorded	-	3.19
SRR11359501	polyp at pH7 6	not recorded	not recorded	not recorded	-	2.32
SRR16705990	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	22.54
SRR16705991	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	21.73
SRR16705972	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	16.94
SRR16705974	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	12.85
SRR16705942	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	12.55
SRR16705960	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	12.54
SRR16705943	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	12.14
SRR16705946	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	11.48
SRR16705971	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	10.45
SRR16705975	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	10.12
SRR16705957	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	9.98
SRR16705965	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	9.21
SRR16705992	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	8.52
SRR16705973	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	6.05
SRR16705989	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	5.90
SRR16705970	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	3.02
SRR16705978	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	85.58
SRR16705944	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	70.51
SRR16705979	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	55.26
SRR16705996	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	52.03
SRR16705997	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	40.10
SRR16706004	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	38.53
SRR16705947	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	31.55
SRR16706005	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	27.15
SRR16705995	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	27.01
SRR16705948	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	26.60
SRR16705976	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	24.31
SRR16705945	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	24.15
SRR16705994	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	23.41
SRR16705993	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	17.63
SRR16705977	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	10.79
SRR16705982	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	6.00
SRR16705999	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	18.16
SRR16705963	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	17.54
SRR16705983	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	15.39
SRR16706000	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	14.43
SRR16705951	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	13.56
SRR16705961	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	13.32
SRR16705984	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	12.17
SRR16705952	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	12.09
SRR16705980	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	11.76
SRR16705949	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	11.35
SRR16705981	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	11.34
SRR16706001	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	7.60
SRR16705950	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	5.00
SRR16705964	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	4.97
SRR16705962	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	4.08
SRR16705998	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	3.43
SRR16705987	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	85.84
SRR16705968	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	44.15
SRR16705966	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	32.75
SRR16705969	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	31.74
SRR16705988	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	27.87
SRR16705955	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	23.07
SRR16705958	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	21.85
SRR16706003	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	20.14
SRR16705967	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	18.57
SRR16705954	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	14.81
SRR16705956	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	13.85
SRR16705959	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	11.03
SRR16705986	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	6.61
SRR16706002	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	5.99
SRR16705985	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	4.76
SRR16705953	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.27
SRR23025710	Polyp	not recorded	not recorded	not recorded	-	5.26
SRR7746668	Polyp	not recorded	not recorded	not recorded	-	3.11
SRR23025709	Polyp	not recorded	not recorded	not recorded	-	2.81
SRR23025708	Polyp	not recorded	not recorded	not recorded	-	2.80
SRR23025711	Polyp	not recorded	not recorded	not recorded	-	2.44
SRR7746667	Polyp	not recorded	not recorded	not recorded	-	2.41
SRR23025713	Polyp	not recorded	not recorded	not recorded	-	2.39
SRR23025712	Polyp	not recorded	not recorded	not recorded	-	2.30
SRR7746666	Polyp	not recorded	not recorded	not recorded	-	1.73
SRR7746669	Polyp	not recorded	not recorded	not recorded	-	0.00

Source: CnidoSite RNA-seq expression matrices (LPERT_TPM, StringTie quantification over 110 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.