Gene detail

Detailed information of OS493_029726-T1 in Lophelia pertusa

Genomic Location: scaffold_183:511435...512405
NR annotation: KAJ7377367.1, hypothetical protein OS493_029726 [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
O18823	Acyloxyacyl hydrolase OS=Oryctolagus cuniculus OX=9986 GN=AOAH PE=1 SV=1
O35298	Acyloxyacyl hydrolase OS=Mus musculus OX=10090 GN=Aoah PE=1 SV=1
P28039	Acyloxyacyl hydrolase OS=Homo sapiens OX=9606 GN=AOAH PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0009368 (this species only)

Pfam domain

No Pfam domain signature was detected for OS493_029726-T1. This gene does have a gene model — the search simply returned no hit.

InterPro

InterPro term	Type	Description	Source
IPR039676 all species →	Family	Acyloxyacyl hydrolase	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR15010 all species →	ACYLOXYACYL HYDROLASE	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005509 all species →	Molecular Function	calcium ion binding	Interproscan
GO:0009104 all species →	Biological Process	lipopolysaccharide catabolic process	Interproscan
GO:0050528 all species →	Molecular Function	acyloxyacyl hydrolase activity	Interproscan
GO:0050728 all species →	Biological Process	negative regulation of inflammatory response	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for OS493_029726-T1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of OS493_029726-T1 across 110 RNA-seq samples of Lophelia pertusa. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

110Samples

105TPM > 0

7Conditions

137.5Max TPM

23.2Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
polyp at pH7 9	18	16	7.07	12.69
polyp at pH7 6	18	17	9.11	16.86
coral polyp · control treatment	16	16	20.08	36.69
coral polyp · oil and dispersant treatment	16	15	60.39	137.47
coral polyp · oil treatment	16	16	20.35	35.05
coral polyp · dispersant treatment	16	16	37.58	135.79
Polyp	10	9	4.57	10.22

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR11359511	polyp at pH7 9	not recorded	not recorded	not recorded	-	12.69
SRR11359522	polyp at pH7 9	not recorded	not recorded	not recorded	-	11.73
SRR11359523	polyp at pH7 9	not recorded	not recorded	not recorded	-	11.69
SRR11359521	polyp at pH7 9	not recorded	not recorded	not recorded	-	11.15
SRR11359518	polyp at pH7 9	not recorded	not recorded	not recorded	-	9.68
SRR11359520	polyp at pH7 9	not recorded	not recorded	not recorded	-	7.72
SRR11359519	polyp at pH7 9	not recorded	not recorded	not recorded	-	7.56
SRR11359499	polyp at pH7 9	not recorded	not recorded	not recorded	-	7.19
SRR11359510	polyp at pH7 9	not recorded	not recorded	not recorded	-	6.80
SRR11359508	polyp at pH7 9	not recorded	not recorded	not recorded	-	6.75
SRR11359494	polyp at pH7 9	not recorded	not recorded	not recorded	-	6.57
SRR11359495	polyp at pH7 9	not recorded	not recorded	not recorded	-	5.96
SRR11359498	polyp at pH7 9	not recorded	not recorded	not recorded	-	5.89
SRR11359496	polyp at pH7 9	not recorded	not recorded	not recorded	-	5.52
SRR11359497	polyp at pH7 9	not recorded	not recorded	not recorded	-	5.41
SRR11359509	polyp at pH7 9	not recorded	not recorded	not recorded	-	5.00
SRR11359506	polyp at pH7 9	not recorded	not recorded	not recorded	-	0.00
SRR11359507	polyp at pH7 9	not recorded	not recorded	not recorded	-	0.00
SRR11359527	polyp at pH7 6	not recorded	not recorded	not recorded	-	16.86
SRR11359526	polyp at pH7 6	not recorded	not recorded	not recorded	-	14.41
SRR11359529	polyp at pH7 6	not recorded	not recorded	not recorded	-	13.85
SRR11359528	polyp at pH7 6	not recorded	not recorded	not recorded	-	13.78
SRR11359514	polyp at pH7 6	not recorded	not recorded	not recorded	-	12.42
SRR11359505	polyp at pH7 6	not recorded	not recorded	not recorded	-	12.30
SRR11359503	polyp at pH7 6	not recorded	not recorded	not recorded	-	9.46
SRR11359515	polyp at pH7 6	not recorded	not recorded	not recorded	-	9.07
SRR11359504	polyp at pH7 6	not recorded	not recorded	not recorded	-	9.04
SRR11359500	polyp at pH7 6	not recorded	not recorded	not recorded	-	8.93
SRR11359501	polyp at pH7 6	not recorded	not recorded	not recorded	-	8.90
SRR11359513	polyp at pH7 6	not recorded	not recorded	not recorded	-	8.78
SRR11359502	polyp at pH7 6	not recorded	not recorded	not recorded	-	8.00
SRR11359525	polyp at pH7 6	not recorded	not recorded	not recorded	-	6.45
SRR11359516	polyp at pH7 6	not recorded	not recorded	not recorded	-	4.92
SRR11359512	polyp at pH7 6	not recorded	not recorded	not recorded	-	3.54
SRR11359517	polyp at pH7 6	not recorded	not recorded	not recorded	-	3.23
SRR11359524	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR16705991	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	36.69
SRR16705990	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	30.19
SRR16705972	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	30.09
SRR16705943	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	27.87
SRR16705974	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	26.91
SRR16705946	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	23.27
SRR16705971	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	20.81
SRR16705942	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	18.42
SRR16705965	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	17.89
SRR16705989	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	17.70
SRR16705960	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	17.52
SRR16705957	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	14.14
SRR16705973	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	12.85
SRR16705975	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	12.20
SRR16705992	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	10.39
SRR16705970	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	4.33
SRR16705978	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	137.47
SRR16705944	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	111.98
SRR16705979	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	105.85
SRR16705996	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	87.84
SRR16706004	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	67.87
SRR16705997	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	64.58
SRR16705995	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	56.27
SRR16705947	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	54.90
SRR16705945	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	50.67
SRR16706005	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	47.97
SRR16705976	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	47.50
SRR16705994	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	47.29
SRR16705948	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	42.42
SRR16705993	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	30.70
SRR16705982	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	12.84
SRR16705977	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	0.00
SRR16705963	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	35.05
SRR16705999	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	32.23
SRR16706000	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	30.05
SRR16705983	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	28.96
SRR16705984	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	27.63
SRR16705961	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	26.89
SRR16705951	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	22.38
SRR16705949	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	21.24
SRR16705980	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	20.35
SRR16705981	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	17.81
SRR16705952	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	17.19
SRR16705950	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	11.51
SRR16705962	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	11.23
SRR16706001	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	10.57
SRR16705964	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	8.33
SRR16705998	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	4.18
SRR16705987	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	135.79
SRR16705968	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	87.56
SRR16705966	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	49.10
SRR16705988	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	47.58
SRR16705969	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	42.99
SRR16705955	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	41.26
SRR16706003	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	37.55
SRR16705958	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	34.30
SRR16705967	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	28.71
SRR16705956	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	20.22
SRR16705954	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	19.68
SRR16705959	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	18.90
SRR16706002	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	13.66
SRR16705986	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	11.83
SRR16705985	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	9.74
SRR16705953	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2.34
SRR23025710	Polyp	not recorded	not recorded	not recorded	-	10.22
SRR23025708	Polyp	not recorded	not recorded	not recorded	-	6.29
SRR7746667	Polyp	not recorded	not recorded	not recorded	-	5.76
SRR23025713	Polyp	not recorded	not recorded	not recorded	-	5.50
SRR7746668	Polyp	not recorded	not recorded	not recorded	-	5.48
SRR23025709	Polyp	not recorded	not recorded	not recorded	-	5.14
SRR23025712	Polyp	not recorded	not recorded	not recorded	-	2.57
SRR23025711	Polyp	not recorded	not recorded	not recorded	-	2.50
SRR7746666	Polyp	not recorded	not recorded	not recorded	-	2.24
SRR7746669	Polyp	not recorded	not recorded	not recorded	-	0.00

Source: CnidoSite RNA-seq expression matrices (LPERT_TPM, StringTie quantification over 110 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.