Gene detail

Detailed information of OS493_029781-T1 in Lophelia pertusa

Genomic Location: scaffold_184:392670...397684
NR annotation: KAJ7370791.1, DOMON domain-containing protein frrs1L [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

No Swiss-Prot hit above the reporting threshold for this gene.

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0000664 (this species only)

Pfam domain

No Pfam domain signature was detected for OS493_029781-T1. This gene does have a gene model — the search simply returned no hit.

InterPro

InterPro term	Type	Description	Source
IPR006593 all species →	Domain	Cytochrome b561/ferric reductase transmembrane	Interproscan
IPR051237 all species →	Family	Ferric-chelate Reductase and Defense	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR45828 all species →	CYTOCHROME B561/FERRIC REDUCTASE TRANSMEMBRANE	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0016021 all species →	Cellular Component	membrane	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for OS493_029781-T1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of OS493_029781-T1 across 110 RNA-seq samples of Lophelia pertusa. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

110Samples

110TPM > 0

7Conditions

213.9Max TPM

74.5Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
polyp at pH7 9	18	18	46.77	72.63
polyp at pH7 6	18	18	52.94	78.73
coral polyp · control treatment	16	16	108.64	213.88
coral polyp · oil and dispersant treatment	16	16	98.55	210.06
coral polyp · oil treatment	16	16	100.32	189.99
coral polyp · dispersant treatment	16	16	81.99	166.66
Polyp	10	10	17.33	28.57

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR11359518	polyp at pH7 9	not recorded	not recorded	not recorded	-	72.63
SRR11359519	polyp at pH7 9	not recorded	not recorded	not recorded	-	70.09
SRR11359495	polyp at pH7 9	not recorded	not recorded	not recorded	-	53.87
SRR11359507	polyp at pH7 9	not recorded	not recorded	not recorded	-	52.93
SRR11359506	polyp at pH7 9	not recorded	not recorded	not recorded	-	52.50
SRR11359497	polyp at pH7 9	not recorded	not recorded	not recorded	-	49.65
SRR11359522	polyp at pH7 9	not recorded	not recorded	not recorded	-	49.60
SRR11359494	polyp at pH7 9	not recorded	not recorded	not recorded	-	49.53
SRR11359523	polyp at pH7 9	not recorded	not recorded	not recorded	-	48.80
SRR11359496	polyp at pH7 9	not recorded	not recorded	not recorded	-	46.44
SRR11359510	polyp at pH7 9	not recorded	not recorded	not recorded	-	44.23
SRR11359520	polyp at pH7 9	not recorded	not recorded	not recorded	-	43.09
SRR11359511	polyp at pH7 9	not recorded	not recorded	not recorded	-	41.73
SRR11359521	polyp at pH7 9	not recorded	not recorded	not recorded	-	41.69
SRR11359508	polyp at pH7 9	not recorded	not recorded	not recorded	-	34.35
SRR11359509	polyp at pH7 9	not recorded	not recorded	not recorded	-	33.82
SRR11359498	polyp at pH7 9	not recorded	not recorded	not recorded	-	29.96
SRR11359499	polyp at pH7 9	not recorded	not recorded	not recorded	-	27.02
SRR11359529	polyp at pH7 6	not recorded	not recorded	not recorded	-	78.73
SRR11359528	polyp at pH7 6	not recorded	not recorded	not recorded	-	76.33
SRR11359526	polyp at pH7 6	not recorded	not recorded	not recorded	-	68.03
SRR11359527	polyp at pH7 6	not recorded	not recorded	not recorded	-	67.25
SRR11359501	polyp at pH7 6	not recorded	not recorded	not recorded	-	66.85
SRR11359500	polyp at pH7 6	not recorded	not recorded	not recorded	-	65.76
SRR11359524	polyp at pH7 6	not recorded	not recorded	not recorded	-	59.63
SRR11359525	polyp at pH7 6	not recorded	not recorded	not recorded	-	53.44
SRR11359512	polyp at pH7 6	not recorded	not recorded	not recorded	-	47.62
SRR11359513	polyp at pH7 6	not recorded	not recorded	not recorded	-	47.14
SRR11359503	polyp at pH7 6	not recorded	not recorded	not recorded	-	47.07
SRR11359502	polyp at pH7 6	not recorded	not recorded	not recorded	-	46.11
SRR11359505	polyp at pH7 6	not recorded	not recorded	not recorded	-	42.58
SRR11359515	polyp at pH7 6	not recorded	not recorded	not recorded	-	40.12
SRR11359517	polyp at pH7 6	not recorded	not recorded	not recorded	-	37.73
SRR11359514	polyp at pH7 6	not recorded	not recorded	not recorded	-	37.32
SRR11359504	polyp at pH7 6	not recorded	not recorded	not recorded	-	36.38
SRR11359516	polyp at pH7 6	not recorded	not recorded	not recorded	-	34.80
SRR16705991	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	213.88
SRR16705974	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	186.52
SRR16705942	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	178.34
SRR16705971	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	153.58
SRR16705965	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	143.40
SRR16705946	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	117.68
SRR16705990	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	106.19
SRR16705943	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	94.31
SRR16705989	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	93.39
SRR16705972	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	85.12
SRR16705973	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	79.94
SRR16705975	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	71.25
SRR16705970	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	64.52
SRR16705957	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	60.62
SRR16705992	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	47.65
SRR16705960	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	41.93
SRR16705947	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	210.06
SRR16705978	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	158.31
SRR16705948	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	140.83
SRR16705976	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	130.81
SRR16705997	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	108.80
SRR16705945	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	106.84
SRR16705944	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	97.54
SRR16706004	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	93.16
SRR16705993	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	88.75
SRR16705979	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	84.37
SRR16705996	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	82.75
SRR16705995	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	74.40
SRR16705977	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	60.65
SRR16706005	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	48.22
SRR16705994	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	46.38
SRR16705982	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	44.98
SRR16705963	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	189.99
SRR16705951	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	186.71
SRR16705983	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	164.79
SRR16705949	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	123.36
SRR16706000	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	110.88
SRR16705950	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	104.00
SRR16705981	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	98.74
SRR16705952	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	95.89
SRR16705999	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	92.99
SRR16705984	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	86.25
SRR16705961	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	78.26
SRR16705962	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	69.97
SRR16706001	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	62.53
SRR16705964	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	51.73
SRR16705980	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	47.71
SRR16705998	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	41.39
SRR16705955	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	166.66
SRR16705968	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	160.76
SRR16705958	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	114.99
SRR16706003	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	111.15
SRR16705987	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	105.57
SRR16705954	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	100.78
SRR16705967	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	87.25
SRR16705956	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	69.23
SRR16705988	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	68.20
SRR16705986	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	61.16
SRR16705969	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	60.08
SRR16705966	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	59.07
SRR16705985	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	50.31
SRR16705953	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	43.95
SRR16706002	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	26.62
SRR16705959	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	26.08
SRR7746666	Polyp	not recorded	not recorded	not recorded	-	28.57
SRR23025709	Polyp	not recorded	not recorded	not recorded	-	23.12
SRR23025711	Polyp	not recorded	not recorded	not recorded	-	22.57
SRR23025708	Polyp	not recorded	not recorded	not recorded	-	21.77
SRR7746669	Polyp	not recorded	not recorded	not recorded	-	17.20
SRR23025713	Polyp	not recorded	not recorded	not recorded	-	17.19
SRR7746668	Polyp	not recorded	not recorded	not recorded	-	12.79
SRR7746667	Polyp	not recorded	not recorded	not recorded	-	11.87
SRR23025710	Polyp	not recorded	not recorded	not recorded	-	9.21
SRR23025712	Polyp	not recorded	not recorded	not recorded	-	9.00

Source: CnidoSite RNA-seq expression matrices (LPERT_TPM, StringTie quantification over 110 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.