Gene detail

Detailed information of OS493_029783-T1 in Lophelia pertusa

Genomic Location: scaffold_184:408631...409797
NR annotation: KAJ7370793.1, DOMON domain-containing protein frrs1L [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

No Swiss-Prot hit above the reporting threshold for this gene.

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0000664 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF03188 all species →	Cytochrom_B561	Eukaryotic cytochrome b561	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR006593 all species →	Domain	Cytochrome b561/ferric reductase transmembrane	Interproscan
IPR051237 all species →	Family	Ferric-chelate Reductase and Defense	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR45828 all species →	CYTOCHROME B561/FERRIC REDUCTASE TRANSMEMBRANE	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0016021 all species →	Cellular Component	membrane	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for OS493_029783-T1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of OS493_029783-T1 across 110 RNA-seq samples of Lophelia pertusa. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

110Samples

107TPM > 0

7Conditions

985.2Max TPM

120.0Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
polyp at pH7 9	18	16	14.05	37.32
polyp at pH7 6	18	17	38.91	119.10
coral polyp · control treatment	16	16	112.20	473.58
coral polyp · oil and dispersant treatment	16	16	386.80	985.20
coral polyp · oil treatment	16	16	99.36	240.07
coral polyp · dispersant treatment	16	16	132.41	343.34
Polyp	10	10	55.54	175.37

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR11359499	polyp at pH7 9	not recorded	not recorded	not recorded	-	37.32
SRR11359498	polyp at pH7 9	not recorded	not recorded	not recorded	-	29.50
SRR11359519	polyp at pH7 9	not recorded	not recorded	not recorded	-	27.53
SRR11359518	polyp at pH7 9	not recorded	not recorded	not recorded	-	23.42
SRR11359522	polyp at pH7 9	not recorded	not recorded	not recorded	-	19.82
SRR11359523	polyp at pH7 9	not recorded	not recorded	not recorded	-	19.61
SRR11359495	polyp at pH7 9	not recorded	not recorded	not recorded	-	17.76
SRR11359521	polyp at pH7 9	not recorded	not recorded	not recorded	-	15.41
SRR11359496	polyp at pH7 9	not recorded	not recorded	not recorded	-	12.19
SRR11359520	polyp at pH7 9	not recorded	not recorded	not recorded	-	11.98
SRR11359497	polyp at pH7 9	not recorded	not recorded	not recorded	-	8.82
SRR11359506	polyp at pH7 9	not recorded	not recorded	not recorded	-	7.32
SRR11359510	polyp at pH7 9	not recorded	not recorded	not recorded	-	7.09
SRR11359511	polyp at pH7 9	not recorded	not recorded	not recorded	-	5.82
SRR11359509	polyp at pH7 9	not recorded	not recorded	not recorded	-	5.16
SRR11359508	polyp at pH7 9	not recorded	not recorded	not recorded	-	4.19
SRR11359494	polyp at pH7 9	not recorded	not recorded	not recorded	-	0.00
SRR11359507	polyp at pH7 9	not recorded	not recorded	not recorded	-	0.00
SRR11359529	polyp at pH7 6	not recorded	not recorded	not recorded	-	119.10
SRR11359528	polyp at pH7 6	not recorded	not recorded	not recorded	-	118.94
SRR11359517	polyp at pH7 6	not recorded	not recorded	not recorded	-	85.78
SRR11359516	polyp at pH7 6	not recorded	not recorded	not recorded	-	77.95
SRR11359504	polyp at pH7 6	not recorded	not recorded	not recorded	-	62.06
SRR11359505	polyp at pH7 6	not recorded	not recorded	not recorded	-	52.69
SRR11359525	polyp at pH7 6	not recorded	not recorded	not recorded	-	23.99
SRR11359514	polyp at pH7 6	not recorded	not recorded	not recorded	-	22.83
SRR11359501	polyp at pH7 6	not recorded	not recorded	not recorded	-	22.37
SRR11359515	polyp at pH7 6	not recorded	not recorded	not recorded	-	21.27
SRR11359500	polyp at pH7 6	not recorded	not recorded	not recorded	-	19.24
SRR11359526	polyp at pH7 6	not recorded	not recorded	not recorded	-	17.98
SRR11359503	polyp at pH7 6	not recorded	not recorded	not recorded	-	16.93
SRR11359527	polyp at pH7 6	not recorded	not recorded	not recorded	-	14.82
SRR11359502	polyp at pH7 6	not recorded	not recorded	not recorded	-	13.47
SRR11359513	polyp at pH7 6	not recorded	not recorded	not recorded	-	7.69
SRR11359512	polyp at pH7 6	not recorded	not recorded	not recorded	-	3.23
SRR11359524	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR16705992	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	473.58
SRR16705990	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	320.76
SRR16705991	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	182.44
SRR16705943	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	119.34
SRR16705989	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	108.07
SRR16705957	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	103.48
SRR16705965	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	94.22
SRR16705972	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	87.25
SRR16705946	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	66.67
SRR16705974	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	56.48
SRR16705971	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	47.80
SRR16705960	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	46.16
SRR16705975	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	38.20
SRR16705942	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	20.57
SRR16705970	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	16.71
SRR16705973	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	13.51
SRR16705996	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	985.20
SRR16705944	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	580.85
SRR16705979	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	577.39
SRR16705994	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	571.10
SRR16705978	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	510.33
SRR16705945	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	486.36
SRR16705947	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	448.06
SRR16705995	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	410.64
SRR16706005	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	318.52
SRR16705976	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	305.01
SRR16706004	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	276.76
SRR16705997	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	229.17
SRR16705982	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	169.35
SRR16705948	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	131.92
SRR16705993	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	111.84
SRR16705977	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	76.26
SRR16705984	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	240.07
SRR16705963	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	230.23
SRR16705981	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	147.14
SRR16705961	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	124.98
SRR16705962	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	115.49
SRR16705999	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	107.44
SRR16705980	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	106.03
SRR16706000	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	102.30
SRR16705983	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	87.16
SRR16705949	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	87.07
SRR16705951	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	66.57
SRR16705952	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	66.15
SRR16705964	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	35.73
SRR16706001	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	29.05
SRR16705998	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	27.51
SRR16705950	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	16.79
SRR16705987	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	343.34
SRR16705969	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	286.86
SRR16705967	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	265.49
SRR16705958	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	210.12
SRR16705968	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	190.62
SRR16705988	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	118.02
SRR16705985	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	105.34
SRR16706003	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	104.62
SRR16705986	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	99.62
SRR16705955	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	96.46
SRR16706002	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	84.02
SRR16705966	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	75.88
SRR16705956	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	46.36
SRR16705959	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	43.43
SRR16705954	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	38.34
SRR16705953	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	10.00
SRR7746667	Polyp	not recorded	not recorded	not recorded	-	175.37
SRR23025711	Polyp	not recorded	not recorded	not recorded	-	91.55
SRR7746668	Polyp	not recorded	not recorded	not recorded	-	86.97
SRR7746669	Polyp	not recorded	not recorded	not recorded	-	68.15
SRR23025712	Polyp	not recorded	not recorded	not recorded	-	40.31
SRR23025710	Polyp	not recorded	not recorded	not recorded	-	34.24
SRR23025713	Polyp	not recorded	not recorded	not recorded	-	19.93
SRR7746666	Polyp	not recorded	not recorded	not recorded	-	18.96
SRR23025708	Polyp	not recorded	not recorded	not recorded	-	11.66
SRR23025709	Polyp	not recorded	not recorded	not recorded	-	8.24

Source: CnidoSite RNA-seq expression matrices (LPERT_TPM, StringTie quantification over 110 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.