Gene detail

Detailed information of OS493_029815-T1 in Lophelia pertusa

Genomic Location: scaffold_185:85822...90379
NR annotation: KAJ7354809.1, hypothetical protein OS493_029815 [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q5EAB6	Protein O-linked-mannose beta-1,2-N-acetylglucosaminyltransferase 1 OS=Bos taurus OX=9913 GN=POMGNT1 PE=2 SV=1
Q8WZA1	Protein O-linked-mannose beta-1,2-N-acetylglucosaminyltransferase 1 OS=Homo sapiens OX=9606 GN=POMGNT1 PE=1 SV=2
Q91X88	Protein O-linked-mannose beta-1,2-N-acetylglucosaminyltransferase 1 OS=Mus musculus OX=10090 GN=Pomgnt1 PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0000939 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF15711 all species →	ILEI	Interleukin-like EMT inducer	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR039477 all species →	Domain	ILEI/PANDER domain	Interproscan
IPR052463 all species →	Family	O-linked-mannose beta-1,2-N-acetylglucosaminyltransferase	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR46396 all species →	PROTEIN O-LINKED-MANNOSE BETA-1,2-N-ACETYLGLUCOSAMINYLTRANSFERASE 1	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0016266 all species →	Biological Process	O-glycan processing	Interproscan
GO:0030173 all species →	Cellular Component	obsolete integral component of Golgi membrane	Interproscan
GO:0047223 all species →	Molecular Function	beta-1,3-galactosyl-O-glycosyl-glycoprotein beta-1,3-N-acetylglucosaminyltransferase activity	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for OS493_029815-T1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of OS493_029815-T1 across 110 RNA-seq samples of Lophelia pertusa. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

110Samples

97TPM > 0

7Conditions

5.0Max TPM

1.6Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
polyp at pH7 9	18	16	1.50	3.04
polyp at pH7 6	18	13	1.27	3.17
coral polyp · control treatment	16	16	1.78	3.78
coral polyp · oil and dispersant treatment	16	15	2.06	5.03
coral polyp · oil treatment	16	15	1.77	4.13
coral polyp · dispersant treatment	16	15	1.61	3.08
Polyp	10	7	1.09	3.85

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR11359494	polyp at pH7 9	not recorded	not recorded	not recorded	-	3.04
SRR11359510	polyp at pH7 9	not recorded	not recorded	not recorded	-	2.71
SRR11359511	polyp at pH7 9	not recorded	not recorded	not recorded	-	2.69
SRR11359519	polyp at pH7 9	not recorded	not recorded	not recorded	-	2.68
SRR11359495	polyp at pH7 9	not recorded	not recorded	not recorded	-	2.65
SRR11359521	polyp at pH7 9	not recorded	not recorded	not recorded	-	1.74
SRR11359498	polyp at pH7 9	not recorded	not recorded	not recorded	-	1.71
SRR11359523	polyp at pH7 9	not recorded	not recorded	not recorded	-	1.59
SRR11359522	polyp at pH7 9	not recorded	not recorded	not recorded	-	1.45
SRR11359497	polyp at pH7 9	not recorded	not recorded	not recorded	-	1.41
SRR11359507	polyp at pH7 9	not recorded	not recorded	not recorded	-	1.21
SRR11359520	polyp at pH7 9	not recorded	not recorded	not recorded	-	1.02
SRR11359496	polyp at pH7 9	not recorded	not recorded	not recorded	-	0.90
SRR11359508	polyp at pH7 9	not recorded	not recorded	not recorded	-	0.90
SRR11359499	polyp at pH7 9	not recorded	not recorded	not recorded	-	0.66
SRR11359509	polyp at pH7 9	not recorded	not recorded	not recorded	-	0.58
SRR11359506	polyp at pH7 9	not recorded	not recorded	not recorded	-	0.00
SRR11359518	polyp at pH7 9	not recorded	not recorded	not recorded	-	0.00
SRR11359525	polyp at pH7 6	not recorded	not recorded	not recorded	-	3.17
SRR11359501	polyp at pH7 6	not recorded	not recorded	not recorded	-	2.68
SRR11359514	polyp at pH7 6	not recorded	not recorded	not recorded	-	2.46
SRR11359505	polyp at pH7 6	not recorded	not recorded	not recorded	-	2.36
SRR11359515	polyp at pH7 6	not recorded	not recorded	not recorded	-	2.33
SRR11359516	polyp at pH7 6	not recorded	not recorded	not recorded	-	1.67
SRR11359504	polyp at pH7 6	not recorded	not recorded	not recorded	-	1.64
SRR11359512	polyp at pH7 6	not recorded	not recorded	not recorded	-	1.48
SRR11359502	polyp at pH7 6	not recorded	not recorded	not recorded	-	1.35
SRR11359526	polyp at pH7 6	not recorded	not recorded	not recorded	-	1.09
SRR11359517	polyp at pH7 6	not recorded	not recorded	not recorded	-	1.02
SRR11359527	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.94
SRR11359503	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.69
SRR11359500	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR11359513	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR11359524	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR11359528	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR11359529	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR16705965	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	3.78
SRR16705960	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	3.05
SRR16705972	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	2.82
SRR16705943	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	2.62
SRR16705990	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	2.37
SRR16705957	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	2.02
SRR16705974	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	2.02
SRR16705992	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	1.90
SRR16705942	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	1.49
SRR16705946	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	1.49
SRR16705975	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	1.09
SRR16705970	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	1.05
SRR16705971	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	0.93
SRR16705973	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	0.84
SRR16705991	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	0.59
SRR16705989	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	0.47
SRR16705996	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	5.03
SRR16705997	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	3.83
SRR16705947	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	2.98
SRR16706005	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	2.86
SRR16705978	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	2.77
SRR16706004	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	2.57
SRR16705993	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	2.39
SRR16705995	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	2.16
SRR16705982	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	1.70
SRR16705948	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	1.68
SRR16705979	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	1.65
SRR16705976	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	1.20
SRR16705944	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	0.94
SRR16705994	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	0.75
SRR16705945	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	0.40
SRR16705977	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	0.00
SRR16705981	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	4.13
SRR16706001	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	3.62
SRR16705999	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	3.25
SRR16705964	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	2.48
SRR16705950	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	2.27
SRR16705984	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	2.02
SRR16705952	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	1.71
SRR16705963	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	1.52
SRR16705983	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	1.43
SRR16705961	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	1.40
SRR16705998	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	1.39
SRR16705951	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	1.27
SRR16706000	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	0.98
SRR16705949	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	0.71
SRR16705962	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	0.14
SRR16705980	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	0.00
SRR16705954	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	3.08
SRR16705986	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2.32
SRR16706003	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2.31
SRR16706002	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2.29
SRR16705967	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2.25
SRR16705966	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2.22
SRR16705956	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2.00
SRR16705959	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.77
SRR16705955	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.70
SRR16705988	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.47
SRR16705969	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.29
SRR16705958	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.25
SRR16705968	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.74
SRR16705987	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.68
SRR16705985	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.40
SRR16705953	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.00
SRR23025709	Polyp	not recorded	not recorded	not recorded	-	3.85
SRR23025708	Polyp	not recorded	not recorded	not recorded	-	2.03
SRR23025713	Polyp	not recorded	not recorded	not recorded	-	1.72
SRR23025711	Polyp	not recorded	not recorded	not recorded	-	1.02
SRR23025710	Polyp	not recorded	not recorded	not recorded	-	0.86
SRR7746666	Polyp	not recorded	not recorded	not recorded	-	0.82
SRR23025712	Polyp	not recorded	not recorded	not recorded	-	0.64
SRR7746667	Polyp	not recorded	not recorded	not recorded	-	0.00
SRR7746668	Polyp	not recorded	not recorded	not recorded	-	0.00
SRR7746669	Polyp	not recorded	not recorded	not recorded	-	0.00

Source: CnidoSite RNA-seq expression matrices (LPERT_TPM, StringTie quantification over 110 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.