Gene detail

Detailed information of OS493_029817-T1 in Lophelia pertusa

Genomic Location: scaffold_185:105279...115071
NR annotation: KAJ7354811.1, Protein O-linked-mannose beta-1,2-N-acetylglucosaminyltransferase 1 [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q5EAB6	Protein O-linked-mannose beta-1,2-N-acetylglucosaminyltransferase 1 OS=Bos taurus OX=9913 GN=POMGNT1 PE=2 SV=1
Q8WZA1	Protein O-linked-mannose beta-1,2-N-acetylglucosaminyltransferase 1 OS=Homo sapiens OX=9606 GN=POMGNT1 PE=1 SV=2
Q5RCB9	Protein O-linked-mannose beta-1,2-N-acetylglucosaminyltransferase 1 OS=Pongo abelii OX=9601 GN=POMGNT1 PE=2 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0000939 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF03071 all species →	GNT-I	GNT-I family	Family	Interproscan
PF15711 all species →	ILEI	Interleukin-like EMT inducer	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR052463 all species →	Family	O-linked-mannose beta-1,2-N-acetylglucosaminyltransferase	Interproscan
IPR029044 all species →	Homologous_superfamily	Nucleotide-diphospho-sugar transferases	Interproscan
IPR004139 all species →	Family	Glycosyl transferase, family 13	Interproscan
IPR039477 all species →	Domain	ILEI/PANDER domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR46396 all species →	PROTEIN O-LINKED-MANNOSE BETA-1,2-N-ACETYLGLUCOSAMINYLTRANSFERASE 1	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0016266 all species →	Biological Process	O-glycan processing	Interproscan
GO:0030173 all species →	Cellular Component	obsolete integral component of Golgi membrane	Interproscan
GO:0047223 all species →	Molecular Function	beta-1,3-galactosyl-O-glycosyl-glycoprotein beta-1,3-N-acetylglucosaminyltransferase activity	Interproscan
GO:0006486 all species →	Biological Process	protein glycosylation	Interproscan
GO:0008375 all species →	Molecular Function	acetylglucosaminyltransferase activity	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K09666	POMGNT1; beta-1,2-N-acetylglucosaminyltransferase	EC:2.4.1.-	Glycosyltransferases	ko01003	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of OS493_029817-T1 across 110 RNA-seq samples of Lophelia pertusa. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

110Samples

110TPM > 0

7Conditions

31.3Max TPM

16.1Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
polyp at pH7 9	18	18	14.38	23.76
polyp at pH7 6	18	18	14.72	18.66
coral polyp · control treatment	16	16	20.51	31.35
coral polyp · oil and dispersant treatment	16	16	19.84	30.70
coral polyp · oil treatment	16	16	18.09	31.10
coral polyp · dispersant treatment	16	16	14.68	22.23
Polyp	10	10	7.39	13.65

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR11359510	polyp at pH7 9	not recorded	not recorded	not recorded	-	23.76
SRR11359511	polyp at pH7 9	not recorded	not recorded	not recorded	-	20.90
SRR11359494	polyp at pH7 9	not recorded	not recorded	not recorded	-	17.11
SRR11359518	polyp at pH7 9	not recorded	not recorded	not recorded	-	16.43
SRR11359519	polyp at pH7 9	not recorded	not recorded	not recorded	-	16.15
SRR11359523	polyp at pH7 9	not recorded	not recorded	not recorded	-	15.97
SRR11359495	polyp at pH7 9	not recorded	not recorded	not recorded	-	15.90
SRR11359522	polyp at pH7 9	not recorded	not recorded	not recorded	-	14.95
SRR11359497	polyp at pH7 9	not recorded	not recorded	not recorded	-	14.84
SRR11359496	polyp at pH7 9	not recorded	not recorded	not recorded	-	13.17
SRR11359499	polyp at pH7 9	not recorded	not recorded	not recorded	-	13.00
SRR11359498	polyp at pH7 9	not recorded	not recorded	not recorded	-	12.09
SRR11359520	polyp at pH7 9	not recorded	not recorded	not recorded	-	12.06
SRR11359521	polyp at pH7 9	not recorded	not recorded	not recorded	-	11.51
SRR11359509	polyp at pH7 9	not recorded	not recorded	not recorded	-	11.17
SRR11359508	polyp at pH7 9	not recorded	not recorded	not recorded	-	10.56
SRR11359506	polyp at pH7 9	not recorded	not recorded	not recorded	-	10.51
SRR11359507	polyp at pH7 9	not recorded	not recorded	not recorded	-	8.66
SRR11359513	polyp at pH7 6	not recorded	not recorded	not recorded	-	18.66
SRR11359514	polyp at pH7 6	not recorded	not recorded	not recorded	-	18.16
SRR11359504	polyp at pH7 6	not recorded	not recorded	not recorded	-	18.15
SRR11359528	polyp at pH7 6	not recorded	not recorded	not recorded	-	18.06
SRR11359529	polyp at pH7 6	not recorded	not recorded	not recorded	-	17.61
SRR11359515	polyp at pH7 6	not recorded	not recorded	not recorded	-	16.98
SRR11359500	polyp at pH7 6	not recorded	not recorded	not recorded	-	16.68
SRR11359512	polyp at pH7 6	not recorded	not recorded	not recorded	-	16.38
SRR11359501	polyp at pH7 6	not recorded	not recorded	not recorded	-	16.34
SRR11359505	polyp at pH7 6	not recorded	not recorded	not recorded	-	15.84
SRR11359526	polyp at pH7 6	not recorded	not recorded	not recorded	-	15.30
SRR11359527	polyp at pH7 6	not recorded	not recorded	not recorded	-	13.66
SRR11359503	polyp at pH7 6	not recorded	not recorded	not recorded	-	13.15
SRR11359502	polyp at pH7 6	not recorded	not recorded	not recorded	-	12.31
SRR11359525	polyp at pH7 6	not recorded	not recorded	not recorded	-	10.85
SRR11359524	polyp at pH7 6	not recorded	not recorded	not recorded	-	9.77
SRR11359516	polyp at pH7 6	not recorded	not recorded	not recorded	-	9.28
SRR11359517	polyp at pH7 6	not recorded	not recorded	not recorded	-	7.79
SRR16705965	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	31.35
SRR16705972	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	29.87
SRR16705990	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	28.81
SRR16705973	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	26.55
SRR16705960	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	25.18
SRR16705957	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	24.52
SRR16705974	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	21.38
SRR16705943	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	21.12
SRR16705942	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	20.62
SRR16705971	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	20.30
SRR16705991	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	18.53
SRR16705975	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	15.85
SRR16705946	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	14.46
SRR16705989	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	12.45
SRR16705970	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	10.55
SRR16705992	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	6.61
SRR16705993	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	30.70
SRR16705979	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	29.27
SRR16705997	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	25.91
SRR16705995	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	25.53
SRR16706004	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	24.40
SRR16705948	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	23.22
SRR16705977	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	22.66
SRR16705978	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	21.16
SRR16706005	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	19.31
SRR16705944	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	19.16
SRR16705976	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	17.69
SRR16705945	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	16.06
SRR16705982	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	12.76
SRR16705947	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	12.15
SRR16705996	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	11.30
SRR16705994	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	6.08
SRR16705999	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	31.10
SRR16706001	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	29.11
SRR16705981	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	28.07
SRR16705950	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	22.76
SRR16706000	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	22.18
SRR16705984	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	21.67
SRR16705952	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	20.85
SRR16705983	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	19.69
SRR16705949	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	16.75
SRR16705961	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	16.24
SRR16705951	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	15.52
SRR16705998	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	12.12
SRR16705980	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	11.77
SRR16705964	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	10.99
SRR16705963	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	7.27
SRR16705962	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	3.36
SRR16705958	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	22.23
SRR16705959	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	22.20
SRR16705988	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	20.46
SRR16706003	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	18.84
SRR16705969	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	18.31
SRR16705987	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	17.56
SRR16705954	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	15.11
SRR16705968	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	15.09
SRR16705956	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	14.40
SRR16705966	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	14.17
SRR16706002	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	13.89
SRR16705986	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	13.25
SRR16705967	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	13.06
SRR16705955	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	12.62
SRR16705985	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2.27
SRR16705953	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.48
SRR23025710	Polyp	not recorded	not recorded	not recorded	-	13.65
SRR23025713	Polyp	not recorded	not recorded	not recorded	-	10.41
SRR23025709	Polyp	not recorded	not recorded	not recorded	-	9.24
SRR7746669	Polyp	not recorded	not recorded	not recorded	-	9.09
SRR23025708	Polyp	not recorded	not recorded	not recorded	-	7.92
SRR23025711	Polyp	not recorded	not recorded	not recorded	-	7.66
SRR23025712	Polyp	not recorded	not recorded	not recorded	-	6.43
SRR7746666	Polyp	not recorded	not recorded	not recorded	-	4.26
SRR7746668	Polyp	not recorded	not recorded	not recorded	-	2.99
SRR7746667	Polyp	not recorded	not recorded	not recorded	-	2.24

Source: CnidoSite RNA-seq expression matrices (LPERT_TPM, StringTie quantification over 110 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.