Detailed information of OS493_029849-T1 in Lophelia pertusa

Genomic Location: scaffold_185:538018...540278
NR annotation: KAJ7354843.1, DNA topoisomerase 2-beta [Desmophyllum pertusum]
Species abbreviation LPERT · all data for this species · gene families


 Gene Structure
More details in JBrowse  Sequence
CDS
Transcript
Protein
 UniProt (Swiss-Prot top hit)
UniProt accessionDescription
Q01320DNA topoisomerase 2-alpha OS=Mus musculus OX=10090 GN=Top2a PE=1 SV=2
P41515DNA topoisomerase 2-alpha OS=Cricetulus griseus OX=10029 GN=TOP2A PE=2 SV=1
P11388DNA topoisomerase 2-alpha OS=Homo sapiens OX=9606 GN=TOP2A PE=1 SV=3
 Gene family
Family typeMembership / link
Orthogroup (gene family)OG0002437 (this species only)

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF16898
all species →		TOPRIM_CC-terminal associated domain of TOPRIMFamilyInterproscan
PF00521
all species →		DNA_topoisoIVDNA gyrase/topoisomerase IV, subunit AFamilyInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR013760
all species →		Homologous_superfamilyDNA topoisomerase, type IIA-like domain superfamilyInterproscan
IPR050634
all species →		FamilyDNA Topoisomerase II EnzymeInterproscan
IPR031660
all species →		DomainC-terminal associated domain of TOPRIMInterproscan
IPR013758
all species →		Homologous_superfamilyDNA topoisomerase, type IIA, domain A, alpha-betaInterproscan
IPR013759
all species →		Homologous_superfamilyDNA topoisomerase, type IIA, subunit B, C-terminalInterproscan
IPR002205
all species →		DomainDNA topoisomerase, type IIA, domain AInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR10169
all species →		DNA TOPOISOMERASE/GYRASEInterproscan

 Gene Ontology
GO termCategoryDescriptionSource
GO:0003918
all species →		Molecular FunctionDNA topoisomerase type II (double strand cut, ATP-hydrolyzing) activityInterproscan
GO:0005524
all species →		Molecular FunctionATP bindingInterproscan
GO:0000712
all species →		Biological Processresolution of meiotic recombination intermediatesInterproscan
GO:0000819
all species →		Biological Processsister chromatid segregationInterproscan
GO:0005634
all species →		Cellular ComponentnucleusInterproscan
GO:0003677
all species →		Molecular FunctionDNA bindingInterproscan
GO:0006259
all species →		Biological ProcessDNA metabolic processInterproscan
GO:0006265
all species →		Biological ProcessDNA topological changeInterproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.
 KEGG pathway
No KEGG orthology assignment for OS493_029849-T1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.
Expression pattern
 Expression trend for OS493_029849-T1 global co-expression network
TOP