Gene detail

Detailed information of OS493_029886-T1 in Lophelia pertusa

Genomic Location: scaffold_186:184509...190501
NR annotation: KAJ7325340.1, hypothetical protein OS493_029886 [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q924U5	Dual specificity testis-specific protein kinase 2 OS=Rattus norvegicus OX=10116 GN=Tesk2 PE=2 SV=1
Q96S53	Dual specificity testis-specific protein kinase 2 OS=Homo sapiens OX=9606 GN=TESK2 PE=1 SV=1
Q8VCT9	Dual specificity testis-specific protein kinase 2 OS=Mus musculus OX=10090 GN=Tesk2 PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0001855 (this species only)

Pfam domain

No Pfam domain signature was detected for OS493_029886-T1. This gene does have a gene model — the search simply returned no hit.

InterPro

InterPro term	Type	Description	Source
IPR011009 all species →	Homologous_superfamily	Protein kinase-like domain superfamily	Interproscan
IPR000719 all species →	Domain	Protein kinase domain	Interproscan
IPR050940 all species →	Family	Actin-regulating Serine/Threonine Kinase	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR46485 all species →	LIM DOMAIN KINASE 1	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0004672 all species →	Molecular Function	protein kinase activity	Interproscan
GO:0005524 all species →	Molecular Function	ATP binding	Interproscan
GO:0006468 all species →	Biological Process	protein phosphorylation	Interproscan
GO:0004674 all species →	Molecular Function	protein serine/threonine kinase activity	Interproscan
GO:0005634 all species →	Cellular Component	nucleus	Interproscan
GO:0005737 all species →	Cellular Component	cytoplasm	Interproscan
GO:0030036 all species →	Biological Process	actin cytoskeleton organization	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for OS493_029886-T1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of OS493_029886-T1 across 110 RNA-seq samples of Lophelia pertusa. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

110Samples

110TPM > 0

7Conditions

32.3Max TPM

10.5Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
polyp at pH7 9	18	18	12.31	19.45
polyp at pH7 6	18	18	10.43	17.99
coral polyp · control treatment	16	16	15.59	32.33
coral polyp · oil and dispersant treatment	16	16	8.76	16.67
coral polyp · oil treatment	16	16	11.59	22.17
coral polyp · dispersant treatment	16	16	6.99	16.10
Polyp	10	10	5.58	9.17

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR11359523	polyp at pH7 9	not recorded	not recorded	not recorded	-	19.45
SRR11359522	polyp at pH7 9	not recorded	not recorded	not recorded	-	16.95
SRR11359520	polyp at pH7 9	not recorded	not recorded	not recorded	-	15.92
SRR11359521	polyp at pH7 9	not recorded	not recorded	not recorded	-	15.68
SRR11359510	polyp at pH7 9	not recorded	not recorded	not recorded	-	14.68
SRR11359511	polyp at pH7 9	not recorded	not recorded	not recorded	-	13.44
SRR11359496	polyp at pH7 9	not recorded	not recorded	not recorded	-	12.53
SRR11359518	polyp at pH7 9	not recorded	not recorded	not recorded	-	12.37
SRR11359497	polyp at pH7 9	not recorded	not recorded	not recorded	-	12.15
SRR11359519	polyp at pH7 9	not recorded	not recorded	not recorded	-	11.68
SRR11359495	polyp at pH7 9	not recorded	not recorded	not recorded	-	11.24
SRR11359509	polyp at pH7 9	not recorded	not recorded	not recorded	-	10.71
SRR11359499	polyp at pH7 9	not recorded	not recorded	not recorded	-	10.66
SRR11359508	polyp at pH7 9	not recorded	not recorded	not recorded	-	10.28
SRR11359498	polyp at pH7 9	not recorded	not recorded	not recorded	-	9.99
SRR11359494	polyp at pH7 9	not recorded	not recorded	not recorded	-	9.98
SRR11359506	polyp at pH7 9	not recorded	not recorded	not recorded	-	7.64
SRR11359507	polyp at pH7 9	not recorded	not recorded	not recorded	-	6.17
SRR11359514	polyp at pH7 6	not recorded	not recorded	not recorded	-	17.99
SRR11359515	polyp at pH7 6	not recorded	not recorded	not recorded	-	16.15
SRR11359513	polyp at pH7 6	not recorded	not recorded	not recorded	-	13.85
SRR11359500	polyp at pH7 6	not recorded	not recorded	not recorded	-	13.56
SRR11359526	polyp at pH7 6	not recorded	not recorded	not recorded	-	13.11
SRR11359501	polyp at pH7 6	not recorded	not recorded	not recorded	-	12.44
SRR11359502	polyp at pH7 6	not recorded	not recorded	not recorded	-	12.34
SRR11359527	polyp at pH7 6	not recorded	not recorded	not recorded	-	11.94
SRR11359503	polyp at pH7 6	not recorded	not recorded	not recorded	-	11.81
SRR11359512	polyp at pH7 6	not recorded	not recorded	not recorded	-	10.08
SRR11359505	polyp at pH7 6	not recorded	not recorded	not recorded	-	8.79
SRR11359504	polyp at pH7 6	not recorded	not recorded	not recorded	-	8.25
SRR11359528	polyp at pH7 6	not recorded	not recorded	not recorded	-	8.18
SRR11359529	polyp at pH7 6	not recorded	not recorded	not recorded	-	7.95
SRR11359525	polyp at pH7 6	not recorded	not recorded	not recorded	-	6.89
SRR11359517	polyp at pH7 6	not recorded	not recorded	not recorded	-	5.03
SRR11359516	polyp at pH7 6	not recorded	not recorded	not recorded	-	4.98
SRR11359524	polyp at pH7 6	not recorded	not recorded	not recorded	-	4.36
SRR16705973	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	32.33
SRR16705942	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	24.42
SRR16705965	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	23.19
SRR16705971	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	21.43
SRR16705974	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	20.28
SRR16705972	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	19.11
SRR16705943	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	16.70
SRR16705946	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	14.98
SRR16705960	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	14.43
SRR16705991	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	13.65
SRR16705975	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	12.71
SRR16705957	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	10.66
SRR16705990	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	9.50
SRR16705970	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	7.31
SRR16705989	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	6.88
SRR16705992	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	1.87
SRR16706004	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	16.67
SRR16705977	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	15.59
SRR16705948	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	12.90
SRR16705993	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	10.53
SRR16705979	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	10.09
SRR16705976	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	9.83
SRR16705997	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	9.73
SRR16705982	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	9.65
SRR16705978	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	8.48
SRR16705995	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	7.52
SRR16705947	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	7.21
SRR16705944	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	5.87
SRR16706005	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	5.17
SRR16705996	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	4.58
SRR16705945	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	4.00
SRR16705994	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	2.26
SRR16706001	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	22.17
SRR16706000	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	21.45
SRR16705998	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	17.05
SRR16705951	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	15.34
SRR16705950	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	12.97
SRR16705999	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	12.35
SRR16705952	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	11.67
SRR16705983	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	11.51
SRR16705949	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	11.41
SRR16705984	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	10.53
SRR16705981	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	9.44
SRR16705963	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	9.15
SRR16705961	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	7.43
SRR16705964	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	6.55
SRR16705980	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	4.31
SRR16705962	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	2.17
SRR16705959	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	16.10
SRR16705956	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	11.23
SRR16705955	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	11.02
SRR16706003	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	10.22
SRR16705954	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	8.66
SRR16705988	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	7.41
SRR16706002	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	6.59
SRR16705986	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	6.53
SRR16705969	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	5.82
SRR16705958	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	5.66
SRR16705966	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	5.40
SRR16705968	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	5.04
SRR16705967	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	4.57
SRR16705987	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	3.83
SRR16705985	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	3.42
SRR16705953	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.38
SRR23025711	Polyp	not recorded	not recorded	not recorded	-	9.17
SRR23025710	Polyp	not recorded	not recorded	not recorded	-	8.77
SRR23025709	Polyp	not recorded	not recorded	not recorded	-	8.77
SRR23025708	Polyp	not recorded	not recorded	not recorded	-	7.22
SRR7746666	Polyp	not recorded	not recorded	not recorded	-	6.94
SRR23025713	Polyp	not recorded	not recorded	not recorded	-	5.68
SRR7746669	Polyp	not recorded	not recorded	not recorded	-	4.45
SRR23025712	Polyp	not recorded	not recorded	not recorded	-	2.54
SRR7746668	Polyp	not recorded	not recorded	not recorded	-	1.50
SRR7746667	Polyp	not recorded	not recorded	not recorded	-	0.80

Source: CnidoSite RNA-seq expression matrices (LPERT_TPM, StringTie quantification over 110 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.