Gene detail

Detailed information of OS493_029889-T1 in Lophelia pertusa

Genomic Location: scaffold_186:220069...224116
NR annotation: KAJ7325343.1, Asparagine synthetase domain-containing protein 1 [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q0V8E4	Asparagine synthetase domain-containing protein 1 OS=Bos taurus OX=9913 GN=ASNSD1 PE=2 SV=1
Q8BFS9	Asparagine synthetase domain-containing protein 1 OS=Mus musculus OX=10090 GN=Asnsd1 PE=2 SV=1
Q9NWL6	Asparagine synthetase domain-containing protein 1 OS=Homo sapiens OX=9606 GN=ASNSD1 PE=1 SV=2

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0004954 (this species only) · gene tree & orthology

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00733 all species →	Asn_synthase	Asparagine synthase	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR014729 all species →	Homologous_superfamily	Rossmann-like alpha/beta/alpha sandwich fold	Interproscan
IPR051857 all species →	Family	Asparagine synthetase domain-containing protein	Interproscan
IPR001962 all species →	Domain	Asparagine synthase	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR45937 all species →	ASPARAGINE SYNTHETASE DOMAIN-CONTAINING PROTEIN 1	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0004066 all species →	Molecular Function	asparagine synthase (glutamine-hydrolyzing) activity	Interproscan
GO:0006529 all species →	Biological Process	asparagine biosynthetic process	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for OS493_029889-T1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of OS493_029889-T1 across 110 RNA-seq samples of Lophelia pertusa. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

110Samples

106TPM > 0

7Conditions

20.6Max TPM

5.2Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
polyp at pH7 9	18	16	6.24	18.61
polyp at pH7 6	18	17	5.32	10.88
coral polyp · control treatment	16	16	6.00	14.36
coral polyp · oil and dispersant treatment	16	16	4.16	20.57
coral polyp · oil treatment	16	16	5.80	12.69
coral polyp · dispersant treatment	16	16	2.73	6.41
Polyp	10	9	6.04	8.43

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR11359499	polyp at pH7 9	not recorded	not recorded	not recorded	-	18.61
SRR11359498	polyp at pH7 9	not recorded	not recorded	not recorded	-	18.27
SRR11359520	polyp at pH7 9	not recorded	not recorded	not recorded	-	9.10
SRR11359521	polyp at pH7 9	not recorded	not recorded	not recorded	-	8.00
SRR11359519	polyp at pH7 9	not recorded	not recorded	not recorded	-	7.86
SRR11359497	polyp at pH7 9	not recorded	not recorded	not recorded	-	6.48
SRR11359523	polyp at pH7 9	not recorded	not recorded	not recorded	-	6.22
SRR11359518	polyp at pH7 9	not recorded	not recorded	not recorded	-	5.91
SRR11359522	polyp at pH7 9	not recorded	not recorded	not recorded	-	5.42
SRR11359496	polyp at pH7 9	not recorded	not recorded	not recorded	-	5.33
SRR11359511	polyp at pH7 9	not recorded	not recorded	not recorded	-	4.23
SRR11359507	polyp at pH7 9	not recorded	not recorded	not recorded	-	4.13
SRR11359510	polyp at pH7 9	not recorded	not recorded	not recorded	-	3.50
SRR11359494	polyp at pH7 9	not recorded	not recorded	not recorded	-	3.24
SRR11359509	polyp at pH7 9	not recorded	not recorded	not recorded	-	3.03
SRR11359508	polyp at pH7 9	not recorded	not recorded	not recorded	-	2.91
SRR11359495	polyp at pH7 9	not recorded	not recorded	not recorded	-	0.00
SRR11359506	polyp at pH7 9	not recorded	not recorded	not recorded	-	0.00
SRR11359525	polyp at pH7 6	not recorded	not recorded	not recorded	-	10.88
SRR11359528	polyp at pH7 6	not recorded	not recorded	not recorded	-	9.29
SRR11359529	polyp at pH7 6	not recorded	not recorded	not recorded	-	8.61
SRR11359513	polyp at pH7 6	not recorded	not recorded	not recorded	-	8.53
SRR11359517	polyp at pH7 6	not recorded	not recorded	not recorded	-	7.21
SRR11359524	polyp at pH7 6	not recorded	not recorded	not recorded	-	7.05
SRR11359516	polyp at pH7 6	not recorded	not recorded	not recorded	-	6.09
SRR11359501	polyp at pH7 6	not recorded	not recorded	not recorded	-	5.07
SRR11359526	polyp at pH7 6	not recorded	not recorded	not recorded	-	4.76
SRR11359515	polyp at pH7 6	not recorded	not recorded	not recorded	-	4.07
SRR11359527	polyp at pH7 6	not recorded	not recorded	not recorded	-	3.85
SRR11359514	polyp at pH7 6	not recorded	not recorded	not recorded	-	3.82
SRR11359503	polyp at pH7 6	not recorded	not recorded	not recorded	-	3.80
SRR11359505	polyp at pH7 6	not recorded	not recorded	not recorded	-	3.55
SRR11359500	polyp at pH7 6	not recorded	not recorded	not recorded	-	3.42
SRR11359502	polyp at pH7 6	not recorded	not recorded	not recorded	-	2.92
SRR11359504	polyp at pH7 6	not recorded	not recorded	not recorded	-	2.89
SRR11359512	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR16705971	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	14.36
SRR16705973	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	12.69
SRR16705965	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	10.99
SRR16705970	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	9.67
SRR16705972	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	7.39
SRR16705960	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	5.86
SRR16705989	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	5.57
SRR16705946	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	5.53
SRR16705943	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	4.64
SRR16705990	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	4.60
SRR16705942	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	4.10
SRR16705975	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	3.03
SRR16705957	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	2.66
SRR16705974	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	2.44
SRR16705992	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	1.52
SRR16705991	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	0.97
SRR16705977	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	20.57
SRR16705993	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	8.94
SRR16705995	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	5.51
SRR16705994	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	4.52
SRR16705976	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	3.92
SRR16705944	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	3.91
SRR16705982	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	3.75
SRR16705945	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	3.52
SRR16705948	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	2.49
SRR16705947	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	2.42
SRR16705996	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	1.78
SRR16705979	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	1.74
SRR16705997	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	1.13
SRR16706004	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	0.99
SRR16706005	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	0.90
SRR16705978	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	0.53
SRR16705962	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	12.69
SRR16705999	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	10.91
SRR16705998	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	9.02
SRR16705950	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	7.90
SRR16705980	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	7.52
SRR16705949	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	6.82
SRR16705981	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	6.15
SRR16705961	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	5.73
SRR16706001	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	5.46
SRR16705984	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	4.18
SRR16706000	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	3.46
SRR16705983	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	2.83
SRR16705964	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	2.79
SRR16705951	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	2.62
SRR16705952	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	2.40
SRR16705963	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	2.30
SRR16705954	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	6.41
SRR16705986	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	5.58
SRR16705958	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	4.72
SRR16705967	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	4.41
SRR16705959	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	4.32
SRR16706003	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	3.24
SRR16706002	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2.89
SRR16705966	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2.85
SRR16705955	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2.31
SRR16705953	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.90
SRR16705968	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.11
SRR16705988	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.03
SRR16705985	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.98
SRR16705969	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.98
SRR16705956	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.54
SRR16705987	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.38
SRR7746667	Polyp	not recorded	not recorded	not recorded	-	8.43
SRR23025711	Polyp	not recorded	not recorded	not recorded	-	7.08
SRR23025708	Polyp	not recorded	not recorded	not recorded	-	6.94
SRR23025713	Polyp	not recorded	not recorded	not recorded	-	6.86
SRR23025712	Polyp	not recorded	not recorded	not recorded	-	6.73
SRR7746666	Polyp	not recorded	not recorded	not recorded	-	6.59
SRR23025709	Polyp	not recorded	not recorded	not recorded	-	6.48
SRR23025710	Polyp	not recorded	not recorded	not recorded	-	6.36
SRR7746668	Polyp	not recorded	not recorded	not recorded	-	4.94
SRR7746669	Polyp	not recorded	not recorded	not recorded	-	0.00

Source: CnidoSite RNA-seq expression matrices (LPERT_TPM, StringTie quantification over 110 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.