Gene detail

Detailed information of OS493_029909-T1 in Lophelia pertusa

Genomic Location: scaffold_186:547430...550207
NR annotation: KAJ7325360.1, Alpha-ketoglutarate-dependent dioxygenase alkB 7, mitochondrial [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q9BT30	Alpha-ketoglutarate-dependent dioxygenase alkB homolog 7, mitochondrial OS=Homo sapiens OX=9606 GN=ALKBH7 PE=1 SV=1
Q2M2S8	Alpha-ketoglutarate-dependent dioxygenase alkB homolog 7, mitochondrial OS=Bos taurus OX=9913 GN=ALKBH7 PE=2 SV=1
Q9D6Z0	Alpha-ketoglutarate-dependent dioxygenase alkB homolog 7, mitochondrial OS=Mus musculus OX=10090 GN=Alkbh7 PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0007386 (this species only) · gene tree & orthology

Pfam domain

No Pfam domain signature was recorded for OS493_029909-T1 in Lophelia pertusa.

InterPro

InterPro term	Type	Description	Source
IPR032870 all species →	Family	Alpha-ketoglutarate-dependent dioxygenase alkB homologue 7-like	Interproscan
IPR037151 all species →	Homologous_superfamily	Alpha-ketoglutarate-dependent dioxygenase AlkB-like superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR21052 all species →	SPERMATOGENESIS ASSOCIATED 11-RELATED	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005759 all species →	Cellular Component	mitochondrial matrix	Interproscan
GO:0006631 all species →	Biological Process	fatty acid metabolic process	Interproscan
GO:0006974 all species →	Biological Process	DNA damage response	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K10769	ALKBH7; alkylated DNA repair protein alkB homolog 7	EC:1.14.11.-	Enzymes with EC numbers	-	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of OS493_029909-T1 across 110 RNA-seq samples of Lophelia pertusa. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

110Samples

107TPM > 0

7Conditions

15.3Max TPM

4.6Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
polyp at pH7 9	18	18	4.47	7.10
polyp at pH7 6	18	16	4.50	11.50
coral polyp · control treatment	16	16	5.93	10.47
coral polyp · oil and dispersant treatment	16	16	4.20	11.28
coral polyp · oil treatment	16	16	6.00	15.34
coral polyp · dispersant treatment	16	16	3.32	9.47
Polyp	10	9	3.85	6.77

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR11359495	polyp at pH7 9	not recorded	not recorded	not recorded	-	7.10
SRR11359510	polyp at pH7 9	not recorded	not recorded	not recorded	-	6.16
SRR11359497	polyp at pH7 9	not recorded	not recorded	not recorded	-	5.97
SRR11359494	polyp at pH7 9	not recorded	not recorded	not recorded	-	5.81
SRR11359511	polyp at pH7 9	not recorded	not recorded	not recorded	-	5.57
SRR11359498	polyp at pH7 9	not recorded	not recorded	not recorded	-	5.27
SRR11359499	polyp at pH7 9	not recorded	not recorded	not recorded	-	5.10
SRR11359496	polyp at pH7 9	not recorded	not recorded	not recorded	-	4.96
SRR11359522	polyp at pH7 9	not recorded	not recorded	not recorded	-	4.65
SRR11359506	polyp at pH7 9	not recorded	not recorded	not recorded	-	4.10
SRR11359523	polyp at pH7 9	not recorded	not recorded	not recorded	-	4.09
SRR11359508	polyp at pH7 9	not recorded	not recorded	not recorded	-	3.77
SRR11359519	polyp at pH7 9	not recorded	not recorded	not recorded	-	3.44
SRR11359509	polyp at pH7 9	not recorded	not recorded	not recorded	-	3.39
SRR11359520	polyp at pH7 9	not recorded	not recorded	not recorded	-	3.12
SRR11359521	polyp at pH7 9	not recorded	not recorded	not recorded	-	2.86
SRR11359507	polyp at pH7 9	not recorded	not recorded	not recorded	-	2.84
SRR11359518	polyp at pH7 9	not recorded	not recorded	not recorded	-	2.34
SRR11359501	polyp at pH7 6	not recorded	not recorded	not recorded	-	11.50
SRR11359515	polyp at pH7 6	not recorded	not recorded	not recorded	-	9.28
SRR11359500	polyp at pH7 6	not recorded	not recorded	not recorded	-	6.89
SRR11359514	polyp at pH7 6	not recorded	not recorded	not recorded	-	6.16
SRR11359513	polyp at pH7 6	not recorded	not recorded	not recorded	-	5.50
SRR11359505	polyp at pH7 6	not recorded	not recorded	not recorded	-	5.01
SRR11359512	polyp at pH7 6	not recorded	not recorded	not recorded	-	4.86
SRR11359503	polyp at pH7 6	not recorded	not recorded	not recorded	-	4.58
SRR11359504	polyp at pH7 6	not recorded	not recorded	not recorded	-	4.46
SRR11359502	polyp at pH7 6	not recorded	not recorded	not recorded	-	4.40
SRR11359527	polyp at pH7 6	not recorded	not recorded	not recorded	-	4.14
SRR11359528	polyp at pH7 6	not recorded	not recorded	not recorded	-	3.57
SRR11359526	polyp at pH7 6	not recorded	not recorded	not recorded	-	3.11
SRR11359529	polyp at pH7 6	not recorded	not recorded	not recorded	-	3.06
SRR11359516	polyp at pH7 6	not recorded	not recorded	not recorded	-	2.50
SRR11359517	polyp at pH7 6	not recorded	not recorded	not recorded	-	2.03
SRR11359524	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR11359525	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR16705957	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	10.47
SRR16705973	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	10.11
SRR16705974	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	7.73
SRR16705946	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	7.56
SRR16705942	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	7.39
SRR16705960	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	6.52
SRR16705972	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	6.39
SRR16705971	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	6.33
SRR16705943	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	5.98
SRR16705965	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	5.26
SRR16705975	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	4.80
SRR16705992	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	4.41
SRR16705991	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	3.85
SRR16705970	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	3.66
SRR16705990	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	2.44
SRR16705989	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	1.96
SRR16705948	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	11.28
SRR16705977	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	7.79
SRR16705997	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	6.16
SRR16705979	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	5.68
SRR16705982	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	5.38
SRR16705993	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	5.14
SRR16705976	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	4.44
SRR16706004	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	3.12
SRR16706005	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	3.03
SRR16705944	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	2.97
SRR16705995	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	2.75
SRR16705978	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	2.60
SRR16705945	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	2.33
SRR16705947	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	2.27
SRR16705996	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	1.17
SRR16705994	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	1.16
SRR16706001	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	15.34
SRR16705964	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	9.47
SRR16705952	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	9.32
SRR16705984	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	8.49
SRR16705998	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	7.38
SRR16705950	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	6.67
SRR16706000	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	5.66
SRR16705999	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	4.94
SRR16705951	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	4.80
SRR16705981	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	4.57
SRR16705961	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	4.41
SRR16705983	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	4.31
SRR16705949	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	3.74
SRR16705980	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	3.00
SRR16705962	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	2.25
SRR16705963	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	1.73
SRR16705959	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	9.47
SRR16705956	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	6.58
SRR16706003	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	5.09
SRR16705988	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	4.72
SRR16705954	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	4.29
SRR16705986	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	3.50
SRR16706002	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2.72
SRR16705968	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2.68
SRR16705969	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2.43
SRR16705967	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2.24
SRR16705955	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2.22
SRR16705958	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.79
SRR16705987	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.79
SRR16705985	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.60
SRR16705966	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.04
SRR16705953	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.93
SRR23025712	Polyp	not recorded	not recorded	not recorded	-	6.77
SRR23025708	Polyp	not recorded	not recorded	not recorded	-	5.53
SRR7746666	Polyp	not recorded	not recorded	not recorded	-	5.33
SRR23025709	Polyp	not recorded	not recorded	not recorded	-	5.10
SRR23025713	Polyp	not recorded	not recorded	not recorded	-	5.00
SRR23025711	Polyp	not recorded	not recorded	not recorded	-	4.46
SRR23025710	Polyp	not recorded	not recorded	not recorded	-	3.94
SRR7746668	Polyp	not recorded	not recorded	not recorded	-	1.81
SRR7746667	Polyp	not recorded	not recorded	not recorded	-	0.58
SRR7746669	Polyp	not recorded	not recorded	not recorded	-	0.00

Source: CnidoSite RNA-seq expression matrices (LPERT_TPM, StringTie quantification over 110 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.