Detailed information of OS493_029980-T1 in Lophelia pertusa

Genomic Location: scaffold_187:480082...481569
NR annotation: KAJ7389641.1, hypothetical protein OS493_029980 [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families


 Gene Structure
More details in JBrowse  Sequence
CDS
Transcript
Protein
 UniProt (Swiss-Prot top hit)
UniProt accessionDescription
Q54ND5Multiple inositol polyphosphate phosphatase 1 OS=Dictyostelium discoideum OX=44689 GN=mipp1 PE=1 SV=1
P52290Probable acid phosphatase DIA3 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=DIA3 PE=3 SV=1
 Gene family
Family typeMembership / link
Orthogroup (gene family)OG0001787 (this species only) · gene tree & orthology

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF00328
all species →		His_Phos_2Histidine phosphatase superfamily (branch 2)FamilyInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR016274
all species →		FamilyHistidine acid phosphatase, eukaryoticInterproscan
IPR029033
all species →		Homologous_superfamilyHistidine phosphatase superfamilyInterproscan
IPR000560
all species →		FamilyHistidine phosphatase superfamily, clade-2Interproscan

 PANTHER
PANTHER termDescriptionSource
PTHR20963
all species →		MULTIPLE INOSITOL POLYPHOSPHATE PHOSPHATASE-RELATEDInterproscan

 Gene Ontology
GO termCategoryDescriptionSource
GO:0003993
all species →		Molecular Functionacid phosphatase activityInterproscan
GO:0052745
all species →		Molecular Functioninositol phosphate phosphatase activityInterproscan
GO:0016791
all species →		Molecular Functionphosphatase activityInterproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.
 KEGG pathway
KOEnzymeEnzyme IDPathwayMap IDSource
K03103MINPP1; multiple inositol-polyphosphate phosphatase / 2,3-bisphosphoglycerate 3-phosphataseEC:3.1.3.62
EC:3.1.3.80
Inositol phosphate metabolismko00562deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of OS493_029980-T1 across 110 RNA-seq samples of Lophelia pertusa. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

110Samples
109TPM > 0
7Conditions
9.5Max TPM
3.9Mean TPM

By condition

ConditionSamplesTPM > 0 Mean TPMMax TPMMean, relative to max
polyp at pH7 9 18 18 5.75 8.99
polyp at pH7 6 18 18 4.25 7.46
coral polyp · control treatment 16 16 4.33 8.66
coral polyp · oil and dispersant treatment 16 15 2.38 4.62
coral polyp · oil treatment 16 16 3.60 7.17
coral polyp · dispersant treatment 16 16 2.43 5.77
Polyp 10 10 4.96 9.46

Per sample · hover a bar for the full sample record

Show the sample table (110 samples)
SRA runConditionTissueDevelopmental stage TreatmentStudyTPM
SRR11359496 polyp at pH7 9 not recorded not recorded not recorded - 8.99
SRR11359494 polyp at pH7 9 not recorded not recorded not recorded - 8.60
SRR11359498 polyp at pH7 9 not recorded not recorded not recorded - 8.11
SRR11359497 polyp at pH7 9 not recorded not recorded not recorded - 7.90
SRR11359509 polyp at pH7 9 not recorded not recorded not recorded - 7.68
SRR11359508 polyp at pH7 9 not recorded not recorded not recorded - 7.24
SRR11359495 polyp at pH7 9 not recorded not recorded not recorded - 7.21
SRR11359499 polyp at pH7 9 not recorded not recorded not recorded - 6.89
SRR11359521 polyp at pH7 9 not recorded not recorded not recorded - 5.87
SRR11359511 polyp at pH7 9 not recorded not recorded not recorded - 5.47
SRR11359510 polyp at pH7 9 not recorded not recorded not recorded - 4.71
SRR11359507 polyp at pH7 9 not recorded not recorded not recorded - 4.49
SRR11359523 polyp at pH7 9 not recorded not recorded not recorded - 4.39
SRR11359520 polyp at pH7 9 not recorded not recorded not recorded - 4.26
SRR11359506 polyp at pH7 9 not recorded not recorded not recorded - 4.13
SRR11359522 polyp at pH7 9 not recorded not recorded not recorded - 4.09
SRR11359518 polyp at pH7 9 not recorded not recorded not recorded - 1.93
SRR11359519 polyp at pH7 9 not recorded not recorded not recorded - 1.56
SRR11359515 polyp at pH7 6 not recorded not recorded not recorded - 7.46
SRR11359514 polyp at pH7 6 not recorded not recorded not recorded - 6.74
SRR11359502 polyp at pH7 6 not recorded not recorded not recorded - 6.45
SRR11359504 polyp at pH7 6 not recorded not recorded not recorded - 6.01
SRR11359500 polyp at pH7 6 not recorded not recorded not recorded - 5.52
SRR11359503 polyp at pH7 6 not recorded not recorded not recorded - 5.36
SRR11359505 polyp at pH7 6 not recorded not recorded not recorded - 5.27
SRR11359525 polyp at pH7 6 not recorded not recorded not recorded - 4.99
SRR11359512 polyp at pH7 6 not recorded not recorded not recorded - 4.51
SRR11359527 polyp at pH7 6 not recorded not recorded not recorded - 3.91
SRR11359526 polyp at pH7 6 not recorded not recorded not recorded - 3.81
SRR11359513 polyp at pH7 6 not recorded not recorded not recorded - 3.62
SRR11359516 polyp at pH7 6 not recorded not recorded not recorded - 3.29
SRR11359517 polyp at pH7 6 not recorded not recorded not recorded - 2.88
SRR11359501 polyp at pH7 6 not recorded not recorded not recorded - 2.63
SRR11359529 polyp at pH7 6 not recorded not recorded not recorded - 1.52
SRR11359524 polyp at pH7 6 not recorded not recorded not recorded - 1.45
SRR11359528 polyp at pH7 6 not recorded not recorded not recorded - 1.01
SRR16705972 coral polyp · control treatment coral polyp polyp control treatment SRP344271 8.66
SRR16705960 coral polyp · control treatment coral polyp polyp control treatment SRP344271 8.06
SRR16705975 coral polyp · control treatment coral polyp polyp control treatment SRP344271 7.57
SRR16705974 coral polyp · control treatment coral polyp polyp control treatment SRP344271 6.25
SRR16705957 coral polyp · control treatment coral polyp polyp control treatment SRP344271 5.33
SRR16705943 coral polyp · control treatment coral polyp polyp control treatment SRP344271 5.22
SRR16705989 coral polyp · control treatment coral polyp polyp control treatment SRP344271 4.24
SRR16705942 coral polyp · control treatment coral polyp polyp control treatment SRP344271 4.22
SRR16705971 coral polyp · control treatment coral polyp polyp control treatment SRP344271 3.74
SRR16705965 coral polyp · control treatment coral polyp polyp control treatment SRP344271 3.69
SRR16705992 coral polyp · control treatment coral polyp polyp control treatment SRP344271 3.18
SRR16705991 coral polyp · control treatment coral polyp polyp control treatment SRP344271 2.74
SRR16705990 coral polyp · control treatment coral polyp polyp control treatment SRP344271 2.23
SRR16705946 coral polyp · control treatment coral polyp polyp control treatment SRP344271 1.73
SRR16705970 coral polyp · control treatment coral polyp polyp control treatment SRP344271 1.54
SRR16705973 coral polyp · control treatment coral polyp polyp control treatment SRP344271 0.81
SRR16705979 coral polyp · oil and dispersant treatment coral polyp polyp oil and dispersant treatment SRP344271 4.62
SRR16705944 coral polyp · oil and dispersant treatment coral polyp polyp oil and dispersant treatment SRP344271 4.59
SRR16705982 coral polyp · oil and dispersant treatment coral polyp polyp oil and dispersant treatment SRP344271 3.89
SRR16705948 coral polyp · oil and dispersant treatment coral polyp polyp oil and dispersant treatment SRP344271 3.83
SRR16706004 coral polyp · oil and dispersant treatment coral polyp polyp oil and dispersant treatment SRP344271 3.49
SRR16705994 coral polyp · oil and dispersant treatment coral polyp polyp oil and dispersant treatment SRP344271 3.21
SRR16705976 coral polyp · oil and dispersant treatment coral polyp polyp oil and dispersant treatment SRP344271 3.04
SRR16705995 coral polyp · oil and dispersant treatment coral polyp polyp oil and dispersant treatment SRP344271 1.98
SRR16705997 coral polyp · oil and dispersant treatment coral polyp polyp oil and dispersant treatment SRP344271 1.96
SRR16706005 coral polyp · oil and dispersant treatment coral polyp polyp oil and dispersant treatment SRP344271 1.86
SRR16705993 coral polyp · oil and dispersant treatment coral polyp polyp oil and dispersant treatment SRP344271 1.62
SRR16705978 coral polyp · oil and dispersant treatment coral polyp polyp oil and dispersant treatment SRP344271 1.51
SRR16705945 coral polyp · oil and dispersant treatment coral polyp polyp oil and dispersant treatment SRP344271 1.01
SRR16705996 coral polyp · oil and dispersant treatment coral polyp polyp oil and dispersant treatment SRP344271 0.82
SRR16705947 coral polyp · oil and dispersant treatment coral polyp polyp oil and dispersant treatment SRP344271 0.67
SRR16705977 coral polyp · oil and dispersant treatment coral polyp polyp oil and dispersant treatment SRP344271 0.00
SRR16706001 coral polyp · oil treatment coral polyp polyp oil treatment SRP344271 7.17
SRR16705952 coral polyp · oil treatment coral polyp polyp oil treatment SRP344271 6.85
SRR16705998 coral polyp · oil treatment coral polyp polyp oil treatment SRP344271 6.71
SRR16705949 coral polyp · oil treatment coral polyp polyp oil treatment SRP344271 5.61
SRR16706000 coral polyp · oil treatment coral polyp polyp oil treatment SRP344271 4.22
SRR16705980 coral polyp · oil treatment coral polyp polyp oil treatment SRP344271 3.54
SRR16705963 coral polyp · oil treatment coral polyp polyp oil treatment SRP344271 3.47
SRR16705983 coral polyp · oil treatment coral polyp polyp oil treatment SRP344271 2.98
SRR16705984 coral polyp · oil treatment coral polyp polyp oil treatment SRP344271 2.79
SRR16705961 coral polyp · oil treatment coral polyp polyp oil treatment SRP344271 2.79
SRR16705999 coral polyp · oil treatment coral polyp polyp oil treatment SRP344271 2.21
SRR16705964 coral polyp · oil treatment coral polyp polyp oil treatment SRP344271 2.16
SRR16705951 coral polyp · oil treatment coral polyp polyp oil treatment SRP344271 2.05
SRR16705981 coral polyp · oil treatment coral polyp polyp oil treatment SRP344271 1.97
SRR16705950 coral polyp · oil treatment coral polyp polyp oil treatment SRP344271 1.77
SRR16705962 coral polyp · oil treatment coral polyp polyp oil treatment SRP344271 1.25
SRR16705956 coral polyp · dispersant treatment coral polyp polyp dispersant treatment SRP344271 5.77
SRR16705959 coral polyp · dispersant treatment coral polyp polyp dispersant treatment SRP344271 4.81
SRR16705988 coral polyp · dispersant treatment coral polyp polyp dispersant treatment SRP344271 4.13
SRR16706002 coral polyp · dispersant treatment coral polyp polyp dispersant treatment SRP344271 3.91
SRR16705955 coral polyp · dispersant treatment coral polyp polyp dispersant treatment SRP344271 3.91
SRR16705969 coral polyp · dispersant treatment coral polyp polyp dispersant treatment SRP344271 3.81
SRR16705954 coral polyp · dispersant treatment coral polyp polyp dispersant treatment SRP344271 2.43
SRR16705958 coral polyp · dispersant treatment coral polyp polyp dispersant treatment SRP344271 2.20
SRR16705953 coral polyp · dispersant treatment coral polyp polyp dispersant treatment SRP344271 1.55
SRR16705966 coral polyp · dispersant treatment coral polyp polyp dispersant treatment SRP344271 1.46
SRR16705968 coral polyp · dispersant treatment coral polyp polyp dispersant treatment SRP344271 1.08
SRR16705986 coral polyp · dispersant treatment coral polyp polyp dispersant treatment SRP344271 1.04
SRR16705967 coral polyp · dispersant treatment coral polyp polyp dispersant treatment SRP344271 0.90
SRR16706003 coral polyp · dispersant treatment coral polyp polyp dispersant treatment SRP344271 0.79
SRR16705985 coral polyp · dispersant treatment coral polyp polyp dispersant treatment SRP344271 0.59
SRR16705987 coral polyp · dispersant treatment coral polyp polyp dispersant treatment SRP344271 0.55
SRR7746669 Polyp not recorded not recorded not recorded - 9.46
SRR7746666 Polyp not recorded not recorded not recorded - 6.82
SRR23025711 Polyp not recorded not recorded not recorded - 6.18
SRR7746667 Polyp not recorded not recorded not recorded - 5.99
SRR7746668 Polyp not recorded not recorded not recorded - 4.73
SRR23025713 Polyp not recorded not recorded not recorded - 4.45
SRR23025712 Polyp not recorded not recorded not recorded - 4.39
SRR23025710 Polyp not recorded not recorded not recorded - 4.30
SRR23025709 Polyp not recorded not recorded not recorded - 1.73
SRR23025708 Polyp not recorded not recorded not recorded - 1.54

Source: CnidoSite RNA-seq expression matrices (LPERT_TPM, StringTie quantification over 110 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.

TOP