Gene detail

Detailed information of OS493_030030-T1 in Lophelia pertusa

Genomic Location: scaffold_188:502661...509517
NR annotation: KAJ7383227.1, Multiple C2 and transmembrane domain-containing protein 2 [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
E9PV86	Multiple C2 and transmembrane domain-containing protein 1 OS=Mus musculus OX=10090 GN=Mctp1 PE=1 SV=1
D4ABL6	Multiple C2 and transmembrane domain-containing protein 1 OS=Rattus norvegicus OX=10116 GN=Mctp1 PE=1 SV=4
Q6DN14	Multiple C2 and transmembrane domain-containing protein 1 OS=Homo sapiens OX=9606 GN=MCTP1 PE=1 SV=2

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0002772 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00168 all species →	C2	C2 domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR035892 all species →	Homologous_superfamily	C2 domain superfamily	Interproscan
IPR000008 all species →	Domain	C2 domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR45911 all species →	C2 DOMAIN-CONTAINING PROTEIN	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005509 all species →	Molecular Function	calcium ion binding	Interproscan
GO:0016021 all species →	Cellular Component	membrane	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for OS493_030030-T1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of OS493_030030-T1 across 110 RNA-seq samples of Lophelia pertusa. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

110Samples

110TPM > 0

7Conditions

552.5Max TPM

137.8Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
polyp at pH7 9	18	18	145.83	311.18
polyp at pH7 6	18	18	91.35	123.09
coral polyp · control treatment	16	16	183.12	340.76
coral polyp · oil and dispersant treatment	16	16	115.90	217.51
coral polyp · oil treatment	16	16	163.15	272.57
coral polyp · dispersant treatment	16	16	110.99	243.69
Polyp	10	10	172.34	552.48

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR11359520	polyp at pH7 9	not recorded	not recorded	not recorded	-	311.18
SRR11359521	polyp at pH7 9	not recorded	not recorded	not recorded	-	305.82
SRR11359522	polyp at pH7 9	not recorded	not recorded	not recorded	-	174.17
SRR11359523	polyp at pH7 9	not recorded	not recorded	not recorded	-	170.99
SRR11359496	polyp at pH7 9	not recorded	not recorded	not recorded	-	169.93
SRR11359497	polyp at pH7 9	not recorded	not recorded	not recorded	-	168.50
SRR11359518	polyp at pH7 9	not recorded	not recorded	not recorded	-	149.61
SRR11359519	polyp at pH7 9	not recorded	not recorded	not recorded	-	146.99
SRR11359506	polyp at pH7 9	not recorded	not recorded	not recorded	-	132.35
SRR11359499	polyp at pH7 9	not recorded	not recorded	not recorded	-	131.44
SRR11359507	polyp at pH7 9	not recorded	not recorded	not recorded	-	131.18
SRR11359498	polyp at pH7 9	not recorded	not recorded	not recorded	-	120.90
SRR11359510	polyp at pH7 9	not recorded	not recorded	not recorded	-	105.85
SRR11359511	polyp at pH7 9	not recorded	not recorded	not recorded	-	103.31
SRR11359509	polyp at pH7 9	not recorded	not recorded	not recorded	-	87.54
SRR11359508	polyp at pH7 9	not recorded	not recorded	not recorded	-	87.22
SRR11359495	polyp at pH7 9	not recorded	not recorded	not recorded	-	65.09
SRR11359494	polyp at pH7 9	not recorded	not recorded	not recorded	-	62.76
SRR11359526	polyp at pH7 6	not recorded	not recorded	not recorded	-	123.09
SRR11359527	polyp at pH7 6	not recorded	not recorded	not recorded	-	123.09
SRR11359501	polyp at pH7 6	not recorded	not recorded	not recorded	-	111.60
SRR11359515	polyp at pH7 6	not recorded	not recorded	not recorded	-	109.12
SRR11359500	polyp at pH7 6	not recorded	not recorded	not recorded	-	103.40
SRR11359514	polyp at pH7 6	not recorded	not recorded	not recorded	-	100.70
SRR11359525	polyp at pH7 6	not recorded	not recorded	not recorded	-	98.04
SRR11359513	polyp at pH7 6	not recorded	not recorded	not recorded	-	96.65
SRR11359529	polyp at pH7 6	not recorded	not recorded	not recorded	-	92.65
SRR11359512	polyp at pH7 6	not recorded	not recorded	not recorded	-	92.19
SRR11359524	polyp at pH7 6	not recorded	not recorded	not recorded	-	89.89
SRR11359528	polyp at pH7 6	not recorded	not recorded	not recorded	-	88.11
SRR11359503	polyp at pH7 6	not recorded	not recorded	not recorded	-	77.80
SRR11359502	polyp at pH7 6	not recorded	not recorded	not recorded	-	74.78
SRR11359505	polyp at pH7 6	not recorded	not recorded	not recorded	-	67.99
SRR11359516	polyp at pH7 6	not recorded	not recorded	not recorded	-	66.68
SRR11359517	polyp at pH7 6	not recorded	not recorded	not recorded	-	64.70
SRR11359504	polyp at pH7 6	not recorded	not recorded	not recorded	-	63.92
SRR16705942	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	340.76
SRR16705970	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	308.65
SRR16705974	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	299.21
SRR16705971	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	277.50
SRR16705972	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	237.46
SRR16705960	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	215.48
SRR16705991	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	210.15
SRR16705943	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	187.90
SRR16705975	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	159.53
SRR16705990	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	137.77
SRR16705965	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	133.87
SRR16705989	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	119.17
SRR16705946	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	108.68
SRR16705992	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	81.10
SRR16705957	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	79.03
SRR16705973	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	33.65
SRR16705979	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	217.51
SRR16705978	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	178.39
SRR16705982	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	171.60
SRR16705993	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	140.26
SRR16705944	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	130.02
SRR16706004	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	123.95
SRR16705976	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	120.77
SRR16705945	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	108.85
SRR16705948	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	103.18
SRR16705996	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	98.17
SRR16705994	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	97.77
SRR16706005	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	87.15
SRR16705995	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	79.26
SRR16705947	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	77.74
SRR16705997	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	77.20
SRR16705977	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	42.65
SRR16705962	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	272.57
SRR16705983	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	248.96
SRR16705949	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	244.73
SRR16705951	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	222.63
SRR16705998	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	186.76
SRR16705961	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	180.41
SRR16705963	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	178.32
SRR16705999	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	166.78
SRR16705980	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	143.67
SRR16705952	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	139.18
SRR16705981	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	122.74
SRR16705964	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	108.32
SRR16705950	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	102.61
SRR16705984	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	99.18
SRR16706000	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	97.40
SRR16706001	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	96.17
SRR16705969	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	243.69
SRR16705986	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	167.50
SRR16705959	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	149.37
SRR16705958	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	145.91
SRR16705956	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	143.95
SRR16705968	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	130.98
SRR16705967	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	119.53
SRR16705987	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	106.82
SRR16706002	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	103.91
SRR16705955	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	102.62
SRR16705954	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	101.63
SRR16706003	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	72.27
SRR16705966	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	61.32
SRR16705988	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	59.40
SRR16705985	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	58.24
SRR16705953	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	8.78
SRR23025708	Polyp	not recorded	not recorded	not recorded	-	552.48
SRR23025711	Polyp	not recorded	not recorded	not recorded	-	284.55
SRR23025713	Polyp	not recorded	not recorded	not recorded	-	240.73
SRR23025710	Polyp	not recorded	not recorded	not recorded	-	239.16
SRR23025709	Polyp	not recorded	not recorded	not recorded	-	140.93
SRR7746666	Polyp	not recorded	not recorded	not recorded	-	83.95
SRR23025712	Polyp	not recorded	not recorded	not recorded	-	61.51
SRR7746669	Polyp	not recorded	not recorded	not recorded	-	46.50
SRR7746667	Polyp	not recorded	not recorded	not recorded	-	39.50
SRR7746668	Polyp	not recorded	not recorded	not recorded	-	34.14

Source: CnidoSite RNA-seq expression matrices (LPERT_TPM, StringTie quantification over 110 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.