Gene detail

Detailed information of OS493_030094-T1 in Lophelia pertusa

Genomic Location: scaffold_189:490971...497549
NR annotation: KAJ7377283.1, hypothetical protein OS493_030094 [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q7K556	TRPL translocation defect protein 14 OS=Drosophila melanogaster OX=7227 GN=Ttd14 PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0008428 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF13521 all species →	AAA_28	AAA domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR038727 all species →	Domain	NadR/Ttd14, AAA domain	Interproscan
IPR027417 all species →	Homologous_superfamily	P-loop containing nucleoside triphosphate hydrolase	Interproscan
IPR033469 all species →	Homologous_superfamily	CYTH-like domain superfamily	Interproscan
IPR053227 all species →	Family	TRPL channel trafficking regulator	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR34932 all species →	TRPL TRANSLOCATION DEFECT PROTEIN 14	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005525 all species →	Molecular Function	GTP binding	Interproscan
GO:0035091 all species →	Molecular Function	phosphatidylinositol binding	Interproscan
GO:0070300 all species →	Molecular Function	phosphatidic acid binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for OS493_030094-T1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of OS493_030094-T1 across 110 RNA-seq samples of Lophelia pertusa. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

110Samples

109TPM > 0

7Conditions

17.3Max TPM

6.1Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
polyp at pH7 9	18	18	6.01	9.19
polyp at pH7 6	18	18	5.59	8.32
coral polyp · control treatment	16	16	7.07	12.86
coral polyp · oil and dispersant treatment	16	16	7.71	17.31
coral polyp · oil treatment	16	16	6.63	14.59
coral polyp · dispersant treatment	16	15	4.74	8.35
Polyp	10	10	4.58	7.79

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR11359518	polyp at pH7 9	not recorded	not recorded	not recorded	-	9.19
SRR11359519	polyp at pH7 9	not recorded	not recorded	not recorded	-	8.50
SRR11359497	polyp at pH7 9	not recorded	not recorded	not recorded	-	8.12
SRR11359494	polyp at pH7 9	not recorded	not recorded	not recorded	-	7.63
SRR11359521	polyp at pH7 9	not recorded	not recorded	not recorded	-	7.09
SRR11359522	polyp at pH7 9	not recorded	not recorded	not recorded	-	6.81
SRR11359510	polyp at pH7 9	not recorded	not recorded	not recorded	-	6.66
SRR11359523	polyp at pH7 9	not recorded	not recorded	not recorded	-	6.46
SRR11359511	polyp at pH7 9	not recorded	not recorded	not recorded	-	6.37
SRR11359496	polyp at pH7 9	not recorded	not recorded	not recorded	-	5.99
SRR11359520	polyp at pH7 9	not recorded	not recorded	not recorded	-	5.62
SRR11359508	polyp at pH7 9	not recorded	not recorded	not recorded	-	4.88
SRR11359498	polyp at pH7 9	not recorded	not recorded	not recorded	-	4.69
SRR11359509	polyp at pH7 9	not recorded	not recorded	not recorded	-	4.59
SRR11359499	polyp at pH7 9	not recorded	not recorded	not recorded	-	4.32
SRR11359507	polyp at pH7 9	not recorded	not recorded	not recorded	-	3.98
SRR11359495	polyp at pH7 9	not recorded	not recorded	not recorded	-	3.91
SRR11359506	polyp at pH7 9	not recorded	not recorded	not recorded	-	3.40
SRR11359513	polyp at pH7 6	not recorded	not recorded	not recorded	-	8.32
SRR11359500	polyp at pH7 6	not recorded	not recorded	not recorded	-	8.32
SRR11359514	polyp at pH7 6	not recorded	not recorded	not recorded	-	8.11
SRR11359515	polyp at pH7 6	not recorded	not recorded	not recorded	-	7.20
SRR11359502	polyp at pH7 6	not recorded	not recorded	not recorded	-	6.92
SRR11359512	polyp at pH7 6	not recorded	not recorded	not recorded	-	5.81
SRR11359524	polyp at pH7 6	not recorded	not recorded	not recorded	-	5.66
SRR11359526	polyp at pH7 6	not recorded	not recorded	not recorded	-	5.23
SRR11359505	polyp at pH7 6	not recorded	not recorded	not recorded	-	5.21
SRR11359503	polyp at pH7 6	not recorded	not recorded	not recorded	-	5.20
SRR11359501	polyp at pH7 6	not recorded	not recorded	not recorded	-	5.08
SRR11359504	polyp at pH7 6	not recorded	not recorded	not recorded	-	4.88
SRR11359525	polyp at pH7 6	not recorded	not recorded	not recorded	-	4.83
SRR11359527	polyp at pH7 6	not recorded	not recorded	not recorded	-	4.49
SRR11359528	polyp at pH7 6	not recorded	not recorded	not recorded	-	4.24
SRR11359516	polyp at pH7 6	not recorded	not recorded	not recorded	-	3.98
SRR11359529	polyp at pH7 6	not recorded	not recorded	not recorded	-	3.80
SRR11359517	polyp at pH7 6	not recorded	not recorded	not recorded	-	3.28
SRR16705965	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	12.86
SRR16705972	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	11.80
SRR16705990	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	10.93
SRR16705973	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	10.80
SRR16705960	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	9.04
SRR16705942	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	8.44
SRR16705974	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	7.43
SRR16705989	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	6.90
SRR16705971	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	6.88
SRR16705970	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	6.77
SRR16705946	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	5.77
SRR16705957	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	4.39
SRR16705991	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	3.72
SRR16705943	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	3.56
SRR16705975	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	3.28
SRR16705992	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	0.57
SRR16705995	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	17.31
SRR16705944	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	17.15
SRR16705977	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	12.91
SRR16705976	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	9.97
SRR16705945	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	9.47
SRR16705994	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	9.15
SRR16705993	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	6.72
SRR16705947	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	6.68
SRR16706004	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	6.15
SRR16705978	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	5.51
SRR16705996	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	5.48
SRR16705979	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	4.59
SRR16706005	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	3.60
SRR16705997	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	3.25
SRR16705982	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	2.77
SRR16705948	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	2.71
SRR16705981	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	14.59
SRR16705980	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	11.05
SRR16705961	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	9.39
SRR16705999	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	8.74
SRR16705950	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	8.50
SRR16705949	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	8.16
SRR16705983	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	6.79
SRR16706000	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	6.49
SRR16705951	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	6.07
SRR16706001	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	5.61
SRR16705984	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	5.53
SRR16705998	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	4.46
SRR16705952	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	3.89
SRR16705964	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	2.84
SRR16705963	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	2.39
SRR16705962	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	1.51
SRR16705967	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	8.35
SRR16705958	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	6.65
SRR16705969	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	6.48
SRR16706003	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	5.97
SRR16705954	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	5.93
SRR16705987	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	5.20
SRR16705966	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	5.09
SRR16705959	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	5.06
SRR16706002	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	4.89
SRR16705986	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	4.77
SRR16705955	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	4.64
SRR16705988	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	4.07
SRR16705968	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	3.87
SRR16705956	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	3.32
SRR16705985	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.56
SRR16705953	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.00
SRR23025710	Polyp	not recorded	not recorded	not recorded	-	7.79
SRR7746669	Polyp	not recorded	not recorded	not recorded	-	6.02
SRR23025708	Polyp	not recorded	not recorded	not recorded	-	5.38
SRR23025711	Polyp	not recorded	not recorded	not recorded	-	5.18
SRR23025713	Polyp	not recorded	not recorded	not recorded	-	4.87
SRR7746668	Polyp	not recorded	not recorded	not recorded	-	4.29
SRR23025712	Polyp	not recorded	not recorded	not recorded	-	4.20
SRR23025709	Polyp	not recorded	not recorded	not recorded	-	3.73
SRR7746666	Polyp	not recorded	not recorded	not recorded	-	2.82
SRR7746667	Polyp	not recorded	not recorded	not recorded	-	1.54

Source: CnidoSite RNA-seq expression matrices (LPERT_TPM, StringTie quantification over 110 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.