Gene detail

Detailed information of OS493_030099-T1 in Lophelia pertusa

Genomic Location: scaffold_189:511825...512493
NR annotation: KAJ7377287.1, hypothetical protein OS493_030099 [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

No Swiss-Prot hit above the reporting threshold for this gene.

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0009881 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF06414 all species →	Zeta_toxin	Zeta toxin	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR010488 all species →	Domain	Zeta toxin domain	Interproscan
IPR027417 all species →	Homologous_superfamily	P-loop containing nucleoside triphosphate hydrolase	Interproscan

PANTHER

No PANTHER signature was detected for OS493_030099-T1. This gene does have a gene model — the search simply returned no hit.

Gene Ontology

GO term	Category	Description	Source
GO:0005524 all species →	Molecular Function	ATP binding	Interproscan
GO:0016301 all species →	Molecular Function	kinase activity	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for OS493_030099-T1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of OS493_030099-T1 across 110 RNA-seq samples of Lophelia pertusa. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

110Samples

110TPM > 0

7Conditions

195.8Max TPM

40.0Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
polyp at pH7 9	18	18	11.28	18.57
polyp at pH7 6	18	18	14.64	27.78
coral polyp · control treatment	16	16	43.70	94.80
coral polyp · oil and dispersant treatment	16	16	82.71	152.94
coral polyp · oil treatment	16	16	30.35	49.61
coral polyp · dispersant treatment	16	16	82.39	195.84
Polyp	10	10	10.20	19.75

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR11359522	polyp at pH7 9	not recorded	not recorded	not recorded	-	18.57
SRR11359523	polyp at pH7 9	not recorded	not recorded	not recorded	-	16.62
SRR11359496	polyp at pH7 9	not recorded	not recorded	not recorded	-	15.99
SRR11359499	polyp at pH7 9	not recorded	not recorded	not recorded	-	14.62
SRR11359497	polyp at pH7 9	not recorded	not recorded	not recorded	-	13.47
SRR11359520	polyp at pH7 9	not recorded	not recorded	not recorded	-	13.34
SRR11359498	polyp at pH7 9	not recorded	not recorded	not recorded	-	13.01
SRR11359519	polyp at pH7 9	not recorded	not recorded	not recorded	-	12.33
SRR11359521	polyp at pH7 9	not recorded	not recorded	not recorded	-	11.60
SRR11359511	polyp at pH7 9	not recorded	not recorded	not recorded	-	9.95
SRR11359518	polyp at pH7 9	not recorded	not recorded	not recorded	-	9.63
SRR11359494	polyp at pH7 9	not recorded	not recorded	not recorded	-	9.35
SRR11359495	polyp at pH7 9	not recorded	not recorded	not recorded	-	8.60
SRR11359506	polyp at pH7 9	not recorded	not recorded	not recorded	-	8.44
SRR11359507	polyp at pH7 9	not recorded	not recorded	not recorded	-	8.33
SRR11359510	polyp at pH7 9	not recorded	not recorded	not recorded	-	7.40
SRR11359508	polyp at pH7 9	not recorded	not recorded	not recorded	-	6.03
SRR11359509	polyp at pH7 9	not recorded	not recorded	not recorded	-	5.73
SRR11359526	polyp at pH7 6	not recorded	not recorded	not recorded	-	27.78
SRR11359527	polyp at pH7 6	not recorded	not recorded	not recorded	-	25.37
SRR11359528	polyp at pH7 6	not recorded	not recorded	not recorded	-	24.54
SRR11359529	polyp at pH7 6	not recorded	not recorded	not recorded	-	22.60
SRR11359515	polyp at pH7 6	not recorded	not recorded	not recorded	-	21.47
SRR11359512	polyp at pH7 6	not recorded	not recorded	not recorded	-	18.77
SRR11359514	polyp at pH7 6	not recorded	not recorded	not recorded	-	18.05
SRR11359513	polyp at pH7 6	not recorded	not recorded	not recorded	-	14.27
SRR11359505	polyp at pH7 6	not recorded	not recorded	not recorded	-	13.36
SRR11359504	polyp at pH7 6	not recorded	not recorded	not recorded	-	12.56
SRR11359517	polyp at pH7 6	not recorded	not recorded	not recorded	-	12.18
SRR11359516	polyp at pH7 6	not recorded	not recorded	not recorded	-	11.35
SRR11359503	polyp at pH7 6	not recorded	not recorded	not recorded	-	9.37
SRR11359502	polyp at pH7 6	not recorded	not recorded	not recorded	-	8.11
SRR11359500	polyp at pH7 6	not recorded	not recorded	not recorded	-	7.74
SRR11359501	polyp at pH7 6	not recorded	not recorded	not recorded	-	5.84
SRR11359525	polyp at pH7 6	not recorded	not recorded	not recorded	-	5.43
SRR11359524	polyp at pH7 6	not recorded	not recorded	not recorded	-	4.69
SRR16705990	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	94.80
SRR16705957	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	85.80
SRR16705973	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	68.85
SRR16705991	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	62.68
SRR16705965	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	49.81
SRR16705960	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	40.57
SRR16705971	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	40.26
SRR16705972	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	36.37
SRR16705946	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	36.25
SRR16705943	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	35.28
SRR16705989	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	33.21
SRR16705992	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	31.68
SRR16705975	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	27.79
SRR16705974	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	20.80
SRR16705942	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	20.36
SRR16705970	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	14.68
SRR16705996	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	152.94
SRR16706005	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	150.38
SRR16705978	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	133.47
SRR16705944	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	115.69
SRR16705979	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	108.01
SRR16706004	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	101.06
SRR16705995	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	81.98
SRR16705977	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	65.35
SRR16705976	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	65.19
SRR16705945	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	62.76
SRR16705997	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	61.17
SRR16705993	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	58.14
SRR16705982	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	54.30
SRR16705947	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	50.91
SRR16705948	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	31.13
SRR16705994	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	30.88
SRR16705949	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	49.61
SRR16705981	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	46.06
SRR16706000	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	43.39
SRR16705999	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	42.61
SRR16705983	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	40.46
SRR16705961	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	39.36
SRR16705963	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	39.33
SRR16706001	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	35.53
SRR16705952	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	34.56
SRR16705951	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	32.65
SRR16705984	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	29.88
SRR16705980	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	18.53
SRR16705998	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	13.40
SRR16705950	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	7.60
SRR16705962	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	6.46
SRR16705964	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	6.23
SRR16706002	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	195.84
SRR16705987	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	175.49
SRR16705958	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	126.41
SRR16705969	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	118.08
SRR16705968	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	104.54
SRR16705988	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	84.95
SRR16705955	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	82.67
SRR16705986	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	81.23
SRR16705967	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	75.21
SRR16705959	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	67.47
SRR16705966	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	60.32
SRR16705956	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	46.83
SRR16706003	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	44.76
SRR16705954	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	43.50
SRR16705985	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	5.96
SRR16705953	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	4.98
SRR7746668	Polyp	not recorded	not recorded	not recorded	-	19.75
SRR23025710	Polyp	not recorded	not recorded	not recorded	-	14.99
SRR23025713	Polyp	not recorded	not recorded	not recorded	-	14.76
SRR7746667	Polyp	not recorded	not recorded	not recorded	-	11.68
SRR23025711	Polyp	not recorded	not recorded	not recorded	-	11.16
SRR23025708	Polyp	not recorded	not recorded	not recorded	-	7.48
SRR7746669	Polyp	not recorded	not recorded	not recorded	-	6.87
SRR7746666	Polyp	not recorded	not recorded	not recorded	-	6.43
SRR23025712	Polyp	not recorded	not recorded	not recorded	-	5.26
SRR23025709	Polyp	not recorded	not recorded	not recorded	-	3.57

Source: CnidoSite RNA-seq expression matrices (LPERT_TPM, StringTie quantification over 110 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.