Gene detail

Detailed information of OS493_030111-T1 in Lophelia pertusa

Genomic Location: scaffold_189:618080...619857
NR annotation: KAJ7377299.1, ribosomal large subunit assembly [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q95JY5	Sterile alpha motif domain-containing protein 15 OS=Macaca fascicularis OX=9541 GN=SAMD15 PE=2 SV=2
F6XZJ7	Sterile alpha motif domain-containing protein 15 OS=Mus musculus OX=10090 GN=Samd15 PE=4 SV=2
Q9P1V8	Sterile alpha motif domain-containing protein 15 OS=Homo sapiens OX=9606 GN=SAMD15 PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0007382 (this species only) · gene tree & orthology

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF07647 all species →	SAM_2	SAM domain (Sterile alpha motif)	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001660 all species →	Domain	Sterile alpha motif domain	Interproscan
IPR013761 all species →	Homologous_superfamily	Sterile alpha motif/pointed domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR46829 all species →	STERILE ALPHA MOTIF DOMAIN-CONTAINING PROTEIN 15	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005515 all species →	Molecular Function	protein binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for OS493_030111-T1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of OS493_030111-T1 across 110 RNA-seq samples of Lophelia pertusa. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

110Samples

107TPM > 0

7Conditions

32.6Max TPM

8.8Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
polyp at pH7 9	18	18	8.93	13.47
polyp at pH7 6	18	15	5.98	12.19
coral polyp · control treatment	16	16	11.01	20.57
coral polyp · oil and dispersant treatment	16	16	7.73	13.97
coral polyp · oil treatment	16	16	10.30	17.27
coral polyp · dispersant treatment	16	16	5.52	11.95
Polyp	10	10	14.70	32.63

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR11359522	polyp at pH7 9	not recorded	not recorded	not recorded	-	13.47
SRR11359523	polyp at pH7 9	not recorded	not recorded	not recorded	-	13.14
SRR11359520	polyp at pH7 9	not recorded	not recorded	not recorded	-	12.81
SRR11359519	polyp at pH7 9	not recorded	not recorded	not recorded	-	11.50
SRR11359521	polyp at pH7 9	not recorded	not recorded	not recorded	-	10.59
SRR11359509	polyp at pH7 9	not recorded	not recorded	not recorded	-	10.04
SRR11359518	polyp at pH7 9	not recorded	not recorded	not recorded	-	9.58
SRR11359508	polyp at pH7 9	not recorded	not recorded	not recorded	-	9.41
SRR11359510	polyp at pH7 9	not recorded	not recorded	not recorded	-	8.36
SRR11359506	polyp at pH7 9	not recorded	not recorded	not recorded	-	7.99
SRR11359498	polyp at pH7 9	not recorded	not recorded	not recorded	-	7.54
SRR11359497	polyp at pH7 9	not recorded	not recorded	not recorded	-	7.34
SRR11359494	polyp at pH7 9	not recorded	not recorded	not recorded	-	6.89
SRR11359495	polyp at pH7 9	not recorded	not recorded	not recorded	-	6.58
SRR11359511	polyp at pH7 9	not recorded	not recorded	not recorded	-	6.51
SRR11359496	polyp at pH7 9	not recorded	not recorded	not recorded	-	6.47
SRR11359507	polyp at pH7 9	not recorded	not recorded	not recorded	-	6.43
SRR11359499	polyp at pH7 9	not recorded	not recorded	not recorded	-	6.15
SRR11359524	polyp at pH7 6	not recorded	not recorded	not recorded	-	12.19
SRR11359512	polyp at pH7 6	not recorded	not recorded	not recorded	-	11.01
SRR11359528	polyp at pH7 6	not recorded	not recorded	not recorded	-	9.60
SRR11359529	polyp at pH7 6	not recorded	not recorded	not recorded	-	8.74
SRR11359514	polyp at pH7 6	not recorded	not recorded	not recorded	-	8.06
SRR11359526	polyp at pH7 6	not recorded	not recorded	not recorded	-	7.70
SRR11359527	polyp at pH7 6	not recorded	not recorded	not recorded	-	7.69
SRR11359516	polyp at pH7 6	not recorded	not recorded	not recorded	-	7.27
SRR11359504	polyp at pH7 6	not recorded	not recorded	not recorded	-	7.23
SRR11359517	polyp at pH7 6	not recorded	not recorded	not recorded	-	7.12
SRR11359505	polyp at pH7 6	not recorded	not recorded	not recorded	-	5.05
SRR11359515	polyp at pH7 6	not recorded	not recorded	not recorded	-	4.56
SRR11359503	polyp at pH7 6	not recorded	not recorded	not recorded	-	4.00
SRR11359501	polyp at pH7 6	not recorded	not recorded	not recorded	-	3.94
SRR11359502	polyp at pH7 6	not recorded	not recorded	not recorded	-	3.38
SRR11359500	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR11359513	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR11359525	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR16705990	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	20.57
SRR16705973	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	18.34
SRR16705992	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	14.80
SRR16705970	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	12.84
SRR16705989	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	12.77
SRR16705957	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	11.47
SRR16705975	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	11.05
SRR16705942	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	11.05
SRR16705972	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	10.26
SRR16705974	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	10.05
SRR16705965	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	9.24
SRR16705971	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	7.95
SRR16705960	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	7.72
SRR16705946	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	7.21
SRR16705943	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	7.13
SRR16705991	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	3.72
SRR16705976	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	13.97
SRR16705945	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	12.46
SRR16705977	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	11.20
SRR16705944	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	10.16
SRR16705995	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	9.27
SRR16705979	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	9.13
SRR16705978	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	8.73
SRR16705948	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	8.52
SRR16705997	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	7.07
SRR16705993	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	6.02
SRR16705947	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	5.30
SRR16706005	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	5.28
SRR16705994	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	5.13
SRR16706004	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	4.21
SRR16705982	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	4.07
SRR16705996	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	3.10
SRR16705981	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	17.27
SRR16705950	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	14.82
SRR16705961	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	14.68
SRR16706001	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	13.94
SRR16705949	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	13.53
SRR16705952	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	13.26
SRR16705984	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	11.69
SRR16705983	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	10.32
SRR16705964	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	9.79
SRR16705998	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	8.91
SRR16705951	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	7.55
SRR16706000	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	6.28
SRR16705980	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	6.05
SRR16705963	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	6.03
SRR16705999	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	5.61
SRR16705962	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	5.04
SRR16705958	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	11.95
SRR16705969	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	8.29
SRR16705966	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	7.74
SRR16705959	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	7.43
SRR16705987	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	6.41
SRR16705956	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	6.27
SRR16705988	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	6.00
SRR16705986	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	5.45
SRR16706003	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	4.54
SRR16705985	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	4.51
SRR16705967	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	4.41
SRR16705968	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	4.11
SRR16705954	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	3.56
SRR16705955	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2.94
SRR16705953	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2.71
SRR16706002	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2.08
SRR7746669	Polyp	not recorded	not recorded	not recorded	-	32.63
SRR7746667	Polyp	not recorded	not recorded	not recorded	-	25.00
SRR23025713	Polyp	not recorded	not recorded	not recorded	-	14.61
SRR7746668	Polyp	not recorded	not recorded	not recorded	-	14.13
SRR23025709	Polyp	not recorded	not recorded	not recorded	-	13.02
SRR23025710	Polyp	not recorded	not recorded	not recorded	-	12.06
SRR7746666	Polyp	not recorded	not recorded	not recorded	-	11.17
SRR23025708	Polyp	not recorded	not recorded	not recorded	-	10.96
SRR23025711	Polyp	not recorded	not recorded	not recorded	-	9.21
SRR23025712	Polyp	not recorded	not recorded	not recorded	-	4.20

Source: CnidoSite RNA-seq expression matrices (LPERT_TPM, StringTie quantification over 110 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.