Gene detail

Detailed information of OS493_030115-T1 in Lophelia pertusa

Genomic Location: scaffold_189:638037...640741
NR annotation: KAJ7377302.1, hypothetical protein OS493_030115 [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
P56839	Phosphoenolpyruvate phosphomutase OS=Mytilus edulis OX=6550 PE=1 SV=3
P33182	Phosphoenolpyruvate phosphomutase OS=Tetrahymena pyriformis OX=5908 GN=PEPM PE=1 SV=1
P29247	Phosphoenolpyruvate phosphomutase OS=Streptomyces hygroscopicus OX=1912 GN=bcpB PE=3 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0006688 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF13714 all species →	PEP_mutase	Phosphoenolpyruvate phosphomutase	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR040442 all species →	Homologous_superfamily	Pyruvate kinase-like domain superfamily	Interproscan
IPR039556 all species →	Domain	ICL/PEPM domain	Interproscan
IPR015813 all species →	Homologous_superfamily	Pyruvate/Phosphoenolpyruvate kinase-like domain superfamily	Interproscan
IPR012698 all species →	Domain	Phosphoenolpyruvate phosphomutase, core	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR42905 all species →	PHOSPHOENOLPYRUVATE CARBOXYLASE	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0003824 all species →	Molecular Function	catalytic activity	Interproscan
GO:0050188 all species →	Molecular Function	phosphoenolpyruvate mutase activity	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K01841	pepM; phosphoenolpyruvate phosphomutase	EC:5.4.2.9	Biosynthesis of various antibiotics	ko00998	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of OS493_030115-T1 across 110 RNA-seq samples of Lophelia pertusa. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

110Samples

110TPM > 0

7Conditions

48.0Max TPM

19.8Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
polyp at pH7 9	18	18	24.05	41.00
polyp at pH7 6	18	18	24.42	48.03
coral polyp · control treatment	16	16	20.05	27.62
coral polyp · oil and dispersant treatment	16	16	15.27	32.90
coral polyp · oil treatment	16	16	19.79	43.11
coral polyp · dispersant treatment	16	16	17.86	28.71
Polyp	10	10	13.33	26.16

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR11359495	polyp at pH7 9	not recorded	not recorded	not recorded	-	41.00
SRR11359494	polyp at pH7 9	not recorded	not recorded	not recorded	-	37.10
SRR11359506	polyp at pH7 9	not recorded	not recorded	not recorded	-	30.07
SRR11359507	polyp at pH7 9	not recorded	not recorded	not recorded	-	29.15
SRR11359496	polyp at pH7 9	not recorded	not recorded	not recorded	-	26.53
SRR11359497	polyp at pH7 9	not recorded	not recorded	not recorded	-	24.95
SRR11359523	polyp at pH7 9	not recorded	not recorded	not recorded	-	24.84
SRR11359499	polyp at pH7 9	not recorded	not recorded	not recorded	-	23.62
SRR11359510	polyp at pH7 9	not recorded	not recorded	not recorded	-	23.19
SRR11359520	polyp at pH7 9	not recorded	not recorded	not recorded	-	23.07
SRR11359521	polyp at pH7 9	not recorded	not recorded	not recorded	-	22.78
SRR11359498	polyp at pH7 9	not recorded	not recorded	not recorded	-	22.04
SRR11359522	polyp at pH7 9	not recorded	not recorded	not recorded	-	20.59
SRR11359511	polyp at pH7 9	not recorded	not recorded	not recorded	-	18.93
SRR11359509	polyp at pH7 9	not recorded	not recorded	not recorded	-	16.80
SRR11359508	polyp at pH7 9	not recorded	not recorded	not recorded	-	16.76
SRR11359518	polyp at pH7 9	not recorded	not recorded	not recorded	-	16.08
SRR11359519	polyp at pH7 9	not recorded	not recorded	not recorded	-	15.34
SRR11359512	polyp at pH7 6	not recorded	not recorded	not recorded	-	48.03
SRR11359514	polyp at pH7 6	not recorded	not recorded	not recorded	-	37.17
SRR11359513	polyp at pH7 6	not recorded	not recorded	not recorded	-	37.09
SRR11359515	polyp at pH7 6	not recorded	not recorded	not recorded	-	35.59
SRR11359528	polyp at pH7 6	not recorded	not recorded	not recorded	-	28.62
SRR11359529	polyp at pH7 6	not recorded	not recorded	not recorded	-	24.56
SRR11359500	polyp at pH7 6	not recorded	not recorded	not recorded	-	24.24
SRR11359527	polyp at pH7 6	not recorded	not recorded	not recorded	-	22.26
SRR11359526	polyp at pH7 6	not recorded	not recorded	not recorded	-	22.10
SRR11359524	polyp at pH7 6	not recorded	not recorded	not recorded	-	21.25
SRR11359501	polyp at pH7 6	not recorded	not recorded	not recorded	-	21.09
SRR11359516	polyp at pH7 6	not recorded	not recorded	not recorded	-	18.54
SRR11359503	polyp at pH7 6	not recorded	not recorded	not recorded	-	17.98
SRR11359505	polyp at pH7 6	not recorded	not recorded	not recorded	-	17.75
SRR11359504	polyp at pH7 6	not recorded	not recorded	not recorded	-	16.48
SRR11359502	polyp at pH7 6	not recorded	not recorded	not recorded	-	16.29
SRR11359525	polyp at pH7 6	not recorded	not recorded	not recorded	-	15.43
SRR11359517	polyp at pH7 6	not recorded	not recorded	not recorded	-	15.00
SRR16705942	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	27.62
SRR16705960	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	26.51
SRR16705973	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	26.02
SRR16705972	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	25.56
SRR16705965	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	24.59
SRR16705974	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	24.34
SRR16705946	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	22.66
SRR16705943	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	21.53
SRR16705991	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	21.01
SRR16705975	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	20.32
SRR16705971	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	18.85
SRR16705989	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	17.07
SRR16705957	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	15.30
SRR16705970	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	12.81
SRR16705990	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	9.25
SRR16705992	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	7.41
SRR16705948	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	32.90
SRR16705997	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	30.44
SRR16705977	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	20.32
SRR16705976	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	19.01
SRR16705979	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	17.27
SRR16705993	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	17.17
SRR16705982	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	16.82
SRR16706005	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	16.37
SRR16706004	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	13.23
SRR16705944	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	12.52
SRR16705978	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	11.74
SRR16705995	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	10.59
SRR16705947	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	7.45
SRR16705945	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	7.44
SRR16705994	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	6.92
SRR16705996	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	4.19
SRR16705950	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	43.11
SRR16705999	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	32.41
SRR16705951	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	26.95
SRR16706001	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	24.80
SRR16705952	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	22.66
SRR16705961	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	21.53
SRR16705964	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	21.28
SRR16705998	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	20.68
SRR16706000	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	18.31
SRR16705983	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	17.30
SRR16705984	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	16.77
SRR16705981	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	16.56
SRR16705949	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	16.09
SRR16705963	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	7.88
SRR16705980	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	6.97
SRR16705962	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	3.33
SRR16705958	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	28.71
SRR16706002	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	27.68
SRR16705954	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	27.21
SRR16705988	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	24.77
SRR16705956	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	24.76
SRR16706003	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	22.24
SRR16705959	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	21.00
SRR16705966	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	18.85
SRR16705969	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	17.15
SRR16705986	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	16.56
SRR16705955	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	16.40
SRR16705968	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	14.58
SRR16705967	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	13.02
SRR16705987	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	5.34
SRR16705985	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	4.91
SRR16705953	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2.64
SRR23025713	Polyp	not recorded	not recorded	not recorded	-	26.16
SRR23025709	Polyp	not recorded	not recorded	not recorded	-	20.08
SRR23025710	Polyp	not recorded	not recorded	not recorded	-	19.22
SRR23025711	Polyp	not recorded	not recorded	not recorded	-	14.95
SRR23025708	Polyp	not recorded	not recorded	not recorded	-	11.49
SRR23025712	Polyp	not recorded	not recorded	not recorded	-	10.83
SRR7746668	Polyp	not recorded	not recorded	not recorded	-	9.05
SRR7746667	Polyp	not recorded	not recorded	not recorded	-	8.24
SRR7746666	Polyp	not recorded	not recorded	not recorded	-	6.97
SRR7746669	Polyp	not recorded	not recorded	not recorded	-	6.28

Source: CnidoSite RNA-seq expression matrices (LPERT_TPM, StringTie quantification over 110 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.