Gene detail

Detailed information of OS493_030129-T1 in Lophelia pertusa

Genomic Location: scaffold_189:736820...739289
NR annotation: KAJ7377315.1, N-lysine methyltransferase setd6 [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
C0H8I2	N-lysine methyltransferase setd6 OS=Salmo salar OX=8030 GN=setd6 PE=2 SV=1
Q803K4	N-lysine methyltransferase setd6 OS=Danio rerio OX=7955 GN=setd6 PE=2 SV=1
D3ZSK5	N-lysine methyltransferase SETD6 OS=Rattus norvegicus OX=10116 GN=Setd6 PE=3 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0004457 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00856 all species →	SET	SET domain	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR046341 all species →	Homologous_superfamily	SET domain superfamily	Interproscan
IPR036464 all species →	Homologous_superfamily	Rubisco LSMT, substrate-binding domain superfamily	Interproscan
IPR001214 all species →	Domain	SET domain	Interproscan
IPR050600 all species →	Family	SETD3/SETD6 methyltransferase	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR13271 all species →	UNCHARACTERIZED PUTATIVE METHYLTRANSFERASE	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005515 all species →	Molecular Function	protein binding	Interproscan
GO:0005634 all species →	Cellular Component	nucleus	Interproscan
GO:0016279 all species →	Molecular Function	protein-lysine N-methyltransferase activity	Interproscan
GO:0018026 all species →	Biological Process	peptidyl-lysine monomethylation	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for OS493_030129-T1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of OS493_030129-T1 across 110 RNA-seq samples of Lophelia pertusa. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

110Samples

104TPM > 0

7Conditions

5.4Max TPM

1.9Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
polyp at pH7 9	18	17	2.03	4.51
polyp at pH7 6	18	15	2.05	4.42
coral polyp · control treatment	16	16	2.69	5.45
coral polyp · oil and dispersant treatment	16	15	1.17	2.17
coral polyp · oil treatment	16	16	2.09	3.44
coral polyp · dispersant treatment	16	16	1.24	2.42
Polyp	10	9	1.82	2.78

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR11359506	polyp at pH7 9	not recorded	not recorded	not recorded	-	4.51
SRR11359495	polyp at pH7 9	not recorded	not recorded	not recorded	-	3.74
SRR11359496	polyp at pH7 9	not recorded	not recorded	not recorded	-	3.64
SRR11359499	polyp at pH7 9	not recorded	not recorded	not recorded	-	3.20
SRR11359497	polyp at pH7 9	not recorded	not recorded	not recorded	-	2.98
SRR11359494	polyp at pH7 9	not recorded	not recorded	not recorded	-	2.94
SRR11359507	polyp at pH7 9	not recorded	not recorded	not recorded	-	1.89
SRR11359511	polyp at pH7 9	not recorded	not recorded	not recorded	-	1.83
SRR11359498	polyp at pH7 9	not recorded	not recorded	not recorded	-	1.76
SRR11359509	polyp at pH7 9	not recorded	not recorded	not recorded	-	1.75
SRR11359508	polyp at pH7 9	not recorded	not recorded	not recorded	-	1.49
SRR11359519	polyp at pH7 9	not recorded	not recorded	not recorded	-	1.41
SRR11359523	polyp at pH7 9	not recorded	not recorded	not recorded	-	1.27
SRR11359510	polyp at pH7 9	not recorded	not recorded	not recorded	-	1.25
SRR11359520	polyp at pH7 9	not recorded	not recorded	not recorded	-	1.24
SRR11359521	polyp at pH7 9	not recorded	not recorded	not recorded	-	0.81
SRR11359522	polyp at pH7 9	not recorded	not recorded	not recorded	-	0.74
SRR11359518	polyp at pH7 9	not recorded	not recorded	not recorded	-	0.00
SRR11359516	polyp at pH7 6	not recorded	not recorded	not recorded	-	4.42
SRR11359517	polyp at pH7 6	not recorded	not recorded	not recorded	-	3.98
SRR11359512	polyp at pH7 6	not recorded	not recorded	not recorded	-	3.74
SRR11359505	polyp at pH7 6	not recorded	not recorded	not recorded	-	3.24
SRR11359504	polyp at pH7 6	not recorded	not recorded	not recorded	-	3.07
SRR11359515	polyp at pH7 6	not recorded	not recorded	not recorded	-	2.76
SRR11359513	polyp at pH7 6	not recorded	not recorded	not recorded	-	2.69
SRR11359514	polyp at pH7 6	not recorded	not recorded	not recorded	-	2.67
SRR11359528	polyp at pH7 6	not recorded	not recorded	not recorded	-	2.45
SRR11359503	polyp at pH7 6	not recorded	not recorded	not recorded	-	2.11
SRR11359502	polyp at pH7 6	not recorded	not recorded	not recorded	-	1.49
SRR11359527	polyp at pH7 6	not recorded	not recorded	not recorded	-	1.21
SRR11359529	polyp at pH7 6	not recorded	not recorded	not recorded	-	1.18
SRR11359500	polyp at pH7 6	not recorded	not recorded	not recorded	-	1.14
SRR11359526	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.76
SRR11359501	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR11359524	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR11359525	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR16705973	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	5.45
SRR16705974	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	3.63
SRR16705972	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	3.62
SRR16705991	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	3.51
SRR16705946	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	3.46
SRR16705960	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	3.17
SRR16705971	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	3.08
SRR16705965	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	2.93
SRR16705970	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	2.89
SRR16705942	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	2.38
SRR16705989	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	2.15
SRR16705957	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	2.09
SRR16705975	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	1.56
SRR16705943	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	1.24
SRR16705990	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	1.12
SRR16705992	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	0.71
SRR16705948	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	2.17
SRR16705993	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	1.96
SRR16705976	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	1.75
SRR16705995	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	1.75
SRR16705994	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	1.57
SRR16705982	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	1.44
SRR16706004	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	1.42
SRR16705944	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	1.18
SRR16705996	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	1.12
SRR16706005	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	0.94
SRR16705997	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	0.80
SRR16705979	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	0.78
SRR16705947	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	0.77
SRR16705945	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	0.58
SRR16705978	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	0.51
SRR16705977	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	0.00
SRR16705983	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	3.44
SRR16705999	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	3.19
SRR16705998	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	3.04
SRR16705949	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	2.54
SRR16705984	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	2.48
SRR16705951	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	2.23
SRR16706001	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	2.20
SRR16705961	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	1.96
SRR16705952	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	1.89
SRR16705981	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	1.82
SRR16706000	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	1.69
SRR16705980	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	1.62
SRR16705963	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	1.52
SRR16705950	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	1.45
SRR16705962	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	1.23
SRR16705964	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	1.19
SRR16705959	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2.42
SRR16705958	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2.29
SRR16705954	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2.19
SRR16705986	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2.04
SRR16705956	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.86
SRR16706002	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.27
SRR16706003	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.25
SRR16705985	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.21
SRR16705967	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.10
SRR16705966	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.97
SRR16705955	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.85
SRR16705969	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.65
SRR16705968	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.64
SRR16705988	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.62
SRR16705953	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.24
SRR16705987	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.21
SRR23025713	Polyp	not recorded	not recorded	not recorded	-	2.78
SRR7746667	Polyp	not recorded	not recorded	not recorded	-	2.55
SRR23025710	Polyp	not recorded	not recorded	not recorded	-	2.52
SRR23025709	Polyp	not recorded	not recorded	not recorded	-	2.31
SRR23025708	Polyp	not recorded	not recorded	not recorded	-	2.13
SRR23025711	Polyp	not recorded	not recorded	not recorded	-	1.90
SRR23025712	Polyp	not recorded	not recorded	not recorded	-	1.81
SRR7746668	Polyp	not recorded	not recorded	not recorded	-	1.15
SRR7746666	Polyp	not recorded	not recorded	not recorded	-	1.04
SRR7746669	Polyp	not recorded	not recorded	not recorded	-	0.00

Source: CnidoSite RNA-seq expression matrices (LPERT_TPM, StringTie quantification over 110 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.