Gene detail

Detailed information of OS493_030134-T1 in Lophelia pertusa

Genomic Location: scaffold_189:797092...797412
NR annotation: KAJ7377320.1, TRPL translocation defect protein 14, partial [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q7K556	TRPL translocation defect protein 14 OS=Drosophila melanogaster OX=7227 GN=Ttd14 PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0008428 (this species only)

Pfam domain

No Pfam domain signature was detected for OS493_030134-T1. This gene does have a gene model — the search simply returned no hit.

InterPro

InterPro term	Type	Description	Source
IPR053227 all species →	Family	TRPL channel trafficking regulator	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR34932 all species →	TRPL TRANSLOCATION DEFECT PROTEIN 14	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005525 all species →	Molecular Function	GTP binding	Interproscan
GO:0035091 all species →	Molecular Function	phosphatidylinositol binding	Interproscan
GO:0070300 all species →	Molecular Function	phosphatidic acid binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for OS493_030134-T1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of OS493_030134-T1 across 110 RNA-seq samples of Lophelia pertusa. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

110Samples

102TPM > 0

7Conditions

16.9Max TPM

6.4Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
polyp at pH7 9	18	17	5.80	12.71
polyp at pH7 6	18	15	4.42	10.78
coral polyp · control treatment	16	15	7.90	14.17
coral polyp · oil and dispersant treatment	16	15	8.33	16.92
coral polyp · oil treatment	16	16	7.89	15.94
coral polyp · dispersant treatment	16	15	6.30	12.46
Polyp	10	9	3.47	6.72

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR11359518	polyp at pH7 9	not recorded	not recorded	not recorded	-	12.71
SRR11359521	polyp at pH7 9	not recorded	not recorded	not recorded	-	10.76
SRR11359496	polyp at pH7 9	not recorded	not recorded	not recorded	-	8.51
SRR11359523	polyp at pH7 9	not recorded	not recorded	not recorded	-	7.47
SRR11359494	polyp at pH7 9	not recorded	not recorded	not recorded	-	7.37
SRR11359522	polyp at pH7 9	not recorded	not recorded	not recorded	-	6.99
SRR11359511	polyp at pH7 9	not recorded	not recorded	not recorded	-	6.42
SRR11359499	polyp at pH7 9	not recorded	not recorded	not recorded	-	6.12
SRR11359520	polyp at pH7 9	not recorded	not recorded	not recorded	-	6.01
SRR11359498	polyp at pH7 9	not recorded	not recorded	not recorded	-	5.92
SRR11359510	polyp at pH7 9	not recorded	not recorded	not recorded	-	5.65
SRR11359497	polyp at pH7 9	not recorded	not recorded	not recorded	-	5.08
SRR11359519	polyp at pH7 9	not recorded	not recorded	not recorded	-	4.80
SRR11359508	polyp at pH7 9	not recorded	not recorded	not recorded	-	4.68
SRR11359507	polyp at pH7 9	not recorded	not recorded	not recorded	-	2.65
SRR11359509	polyp at pH7 9	not recorded	not recorded	not recorded	-	1.93
SRR11359495	polyp at pH7 9	not recorded	not recorded	not recorded	-	1.31
SRR11359506	polyp at pH7 9	not recorded	not recorded	not recorded	-	0.00
SRR11359500	polyp at pH7 6	not recorded	not recorded	not recorded	-	10.78
SRR11359514	polyp at pH7 6	not recorded	not recorded	not recorded	-	7.72
SRR11359529	polyp at pH7 6	not recorded	not recorded	not recorded	-	7.32
SRR11359515	polyp at pH7 6	not recorded	not recorded	not recorded	-	7.18
SRR11359526	polyp at pH7 6	not recorded	not recorded	not recorded	-	6.44
SRR11359513	polyp at pH7 6	not recorded	not recorded	not recorded	-	6.10
SRR11359505	polyp at pH7 6	not recorded	not recorded	not recorded	-	5.55
SRR11359528	polyp at pH7 6	not recorded	not recorded	not recorded	-	4.59
SRR11359524	polyp at pH7 6	not recorded	not recorded	not recorded	-	4.17
SRR11359503	polyp at pH7 6	not recorded	not recorded	not recorded	-	3.83
SRR11359517	polyp at pH7 6	not recorded	not recorded	not recorded	-	3.71
SRR11359527	polyp at pH7 6	not recorded	not recorded	not recorded	-	3.70
SRR11359516	polyp at pH7 6	not recorded	not recorded	not recorded	-	3.16
SRR11359504	polyp at pH7 6	not recorded	not recorded	not recorded	-	2.69
SRR11359502	polyp at pH7 6	not recorded	not recorded	not recorded	-	2.52
SRR11359501	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR11359512	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR11359525	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR16705974	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	14.17
SRR16705965	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	13.00
SRR16705989	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	11.24
SRR16705972	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	11.15
SRR16705957	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	10.06
SRR16705942	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	9.16
SRR16705990	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	9.10
SRR16705971	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	8.97
SRR16705975	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	8.37
SRR16705960	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	7.84
SRR16705970	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	6.85
SRR16705973	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	4.95
SRR16705943	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	4.27
SRR16705946	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	4.17
SRR16705991	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	3.15
SRR16705992	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	0.00
SRR16705995	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	16.92
SRR16705994	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	16.19
SRR16705944	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	15.39
SRR16705976	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	12.62
SRR16705945	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	11.48
SRR16705993	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	10.17
SRR16706004	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	8.85
SRR16705979	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	7.90
SRR16706005	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	7.05
SRR16705947	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	6.06
SRR16705978	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	5.63
SRR16705948	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	5.09
SRR16705996	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	3.65
SRR16705982	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	3.24
SRR16705997	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	3.07
SRR16705977	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	0.00
SRR16705981	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	15.94
SRR16705999	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	12.83
SRR16706001	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	10.51
SRR16705984	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	8.08
SRR16705963	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	8.04
SRR16705980	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	8.03
SRR16705961	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	7.91
SRR16705964	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	7.89
SRR16706000	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	7.00
SRR16705950	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	6.90
SRR16705949	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	6.65
SRR16705998	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	6.62
SRR16705952	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	6.59
SRR16705983	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	5.64
SRR16705951	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	5.30
SRR16705962	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	2.28
SRR16705966	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	12.46
SRR16705958	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	10.69
SRR16705967	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	10.15
SRR16705969	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	8.85
SRR16705955	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	8.70
SRR16705956	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	7.02
SRR16706003	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	5.94
SRR16705986	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	5.77
SRR16705988	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	5.47
SRR16705987	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	5.40
SRR16706002	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	5.13
SRR16705968	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	5.03
SRR16705954	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	4.83
SRR16705959	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	3.68
SRR16705985	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.64
SRR16705953	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.00
SRR23025708	Polyp	not recorded	not recorded	not recorded	-	6.72
SRR23025711	Polyp	not recorded	not recorded	not recorded	-	5.26
SRR7746668	Polyp	not recorded	not recorded	not recorded	-	5.18
SRR23025710	Polyp	not recorded	not recorded	not recorded	-	4.91
SRR7746667	Polyp	not recorded	not recorded	not recorded	-	3.96
SRR23025709	Polyp	not recorded	not recorded	not recorded	-	3.82
SRR7746666	Polyp	not recorded	not recorded	not recorded	-	2.15
SRR23025713	Polyp	not recorded	not recorded	not recorded	-	1.93
SRR23025712	Polyp	not recorded	not recorded	not recorded	-	0.74
SRR7746669	Polyp	not recorded	not recorded	not recorded	-	0.00

Source: CnidoSite RNA-seq expression matrices (LPERT_TPM, StringTie quantification over 110 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.