Gene detail

Detailed information of OS493_030196-T1 in Lophelia pertusa

Genomic Location: scaffold_191:45678...49485
NR annotation: KAJ7354779.1, bleomycin hydrolase [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
P28839	Cytosol aminopeptidase OS=Sus scrofa OX=9823 GN=LAP3 PE=1 SV=2
P00727	Cytosol aminopeptidase OS=Bos taurus OX=9913 GN=LAP3 PE=1 SV=3
Q9CPY7	Cytosol aminopeptidase OS=Mus musculus OX=10090 GN=Lap3 PE=1 SV=3

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0002869 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00883 all species →	Peptidase_M17	Cytosol aminopeptidase family, catalytic domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000819 all species →	Domain	Peptidase M17, leucyl aminopeptidase, C-terminal	Interproscan
IPR011356 all species →	Family	Peptidase M17, leucine aminopeptidase/peptidase B	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR11963 all species →	LEUCINE AMINOPEPTIDASE-RELATED	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0006508 all species →	Biological Process	proteolysis	Interproscan
GO:0046872 all species →	Molecular Function	metal ion binding	Interproscan
GO:0070006 all species →	Molecular Function	metalloaminopeptidase activity	Interproscan
GO:0005737 all species →	Cellular Component	cytoplasm	Interproscan
GO:0019538 all species →	Biological Process	protein metabolic process	Interproscan
GO:0030145 all species →	Molecular Function	manganese ion binding	Interproscan
GO:0008233 all species →	Molecular Function	peptidase activity	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for OS493_030196-T1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of OS493_030196-T1 across 110 RNA-seq samples of Lophelia pertusa. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

110Samples

110TPM > 0

7Conditions

111.5Max TPM

31.7Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
polyp at pH7 9	18	18	33.82	40.32
polyp at pH7 6	18	18	36.87	55.48
coral polyp · control treatment	16	16	24.47	42.96
coral polyp · oil and dispersant treatment	16	16	17.76	29.03
coral polyp · oil treatment	16	16	27.05	49.68
coral polyp · dispersant treatment	16	16	24.25	72.86
Polyp	10	10	71.76	111.52

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR11359523	polyp at pH7 9	not recorded	not recorded	not recorded	-	40.32
SRR11359519	polyp at pH7 9	not recorded	not recorded	not recorded	-	39.85
SRR11359494	polyp at pH7 9	not recorded	not recorded	not recorded	-	38.87
SRR11359507	polyp at pH7 9	not recorded	not recorded	not recorded	-	37.30
SRR11359520	polyp at pH7 9	not recorded	not recorded	not recorded	-	37.12
SRR11359506	polyp at pH7 9	not recorded	not recorded	not recorded	-	36.95
SRR11359522	polyp at pH7 9	not recorded	not recorded	not recorded	-	36.77
SRR11359518	polyp at pH7 9	not recorded	not recorded	not recorded	-	36.30
SRR11359521	polyp at pH7 9	not recorded	not recorded	not recorded	-	35.17
SRR11359499	polyp at pH7 9	not recorded	not recorded	not recorded	-	32.12
SRR11359508	polyp at pH7 9	not recorded	not recorded	not recorded	-	31.91
SRR11359495	polyp at pH7 9	not recorded	not recorded	not recorded	-	31.68
SRR11359509	polyp at pH7 9	not recorded	not recorded	not recorded	-	31.41
SRR11359510	polyp at pH7 9	not recorded	not recorded	not recorded	-	30.50
SRR11359511	polyp at pH7 9	not recorded	not recorded	not recorded	-	29.12
SRR11359498	polyp at pH7 9	not recorded	not recorded	not recorded	-	28.55
SRR11359496	polyp at pH7 9	not recorded	not recorded	not recorded	-	27.81
SRR11359497	polyp at pH7 9	not recorded	not recorded	not recorded	-	27.03
SRR11359529	polyp at pH7 6	not recorded	not recorded	not recorded	-	55.48
SRR11359528	polyp at pH7 6	not recorded	not recorded	not recorded	-	55.39
SRR11359524	polyp at pH7 6	not recorded	not recorded	not recorded	-	46.60
SRR11359525	polyp at pH7 6	not recorded	not recorded	not recorded	-	45.01
SRR11359501	polyp at pH7 6	not recorded	not recorded	not recorded	-	44.47
SRR11359504	polyp at pH7 6	not recorded	not recorded	not recorded	-	42.56
SRR11359505	polyp at pH7 6	not recorded	not recorded	not recorded	-	38.75
SRR11359500	polyp at pH7 6	not recorded	not recorded	not recorded	-	38.52
SRR11359516	polyp at pH7 6	not recorded	not recorded	not recorded	-	36.00
SRR11359517	polyp at pH7 6	not recorded	not recorded	not recorded	-	32.94
SRR11359502	polyp at pH7 6	not recorded	not recorded	not recorded	-	31.50
SRR11359503	polyp at pH7 6	not recorded	not recorded	not recorded	-	31.24
SRR11359514	polyp at pH7 6	not recorded	not recorded	not recorded	-	28.15
SRR11359512	polyp at pH7 6	not recorded	not recorded	not recorded	-	28.13
SRR11359515	polyp at pH7 6	not recorded	not recorded	not recorded	-	27.74
SRR11359527	polyp at pH7 6	not recorded	not recorded	not recorded	-	27.29
SRR11359526	polyp at pH7 6	not recorded	not recorded	not recorded	-	27.15
SRR11359513	polyp at pH7 6	not recorded	not recorded	not recorded	-	26.75
SRR16705946	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	42.96
SRR16705942	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	34.13
SRR16705992	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	32.61
SRR16705970	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	31.31
SRR16705957	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	28.49
SRR16705960	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	27.41
SRR16705974	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	27.20
SRR16705991	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	27.13
SRR16705972	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	26.29
SRR16705975	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	25.43
SRR16705989	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	23.12
SRR16705943	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	22.10
SRR16705973	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	13.45
SRR16705971	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	12.34
SRR16705965	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	11.14
SRR16705990	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	6.45
SRR16705982	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	29.03
SRR16705947	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	26.11
SRR16706005	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	24.24
SRR16705977	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	23.82
SRR16705997	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	22.88
SRR16705976	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	21.19
SRR16705994	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	19.42
SRR16706004	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	19.32
SRR16705979	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	15.60
SRR16705944	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	15.19
SRR16705948	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	14.93
SRR16705978	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	14.05
SRR16705996	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	10.76
SRR16705945	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	10.48
SRR16705995	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	9.27
SRR16705993	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	7.85
SRR16705964	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	49.68
SRR16706000	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	38.18
SRR16705998	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	32.48
SRR16705949	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	31.28
SRR16705984	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	30.91
SRR16705980	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	30.26
SRR16705983	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	29.47
SRR16705951	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	27.44
SRR16706001	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	26.81
SRR16705950	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	24.86
SRR16705952	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	23.90
SRR16705963	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	23.23
SRR16705961	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	22.61
SRR16705962	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	17.21
SRR16705999	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	13.72
SRR16705981	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	10.74
SRR16705953	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	72.86
SRR16705985	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	40.56
SRR16705958	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	38.77
SRR16706002	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	27.07
SRR16705955	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	25.91
SRR16705959	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	25.73
SRR16706003	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	24.05
SRR16705956	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	23.29
SRR16705966	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	21.71
SRR16705969	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	19.16
SRR16705968	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	18.47
SRR16705988	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	16.09
SRR16705986	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	10.69
SRR16705954	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	9.54
SRR16705967	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	9.22
SRR16705987	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	4.87
SRR23025708	Polyp	not recorded	not recorded	not recorded	-	111.52
SRR23025709	Polyp	not recorded	not recorded	not recorded	-	104.37
SRR7746668	Polyp	not recorded	not recorded	not recorded	-	83.76
SRR23025712	Polyp	not recorded	not recorded	not recorded	-	81.16
SRR7746669	Polyp	not recorded	not recorded	not recorded	-	72.28
SRR7746667	Polyp	not recorded	not recorded	not recorded	-	71.14
SRR23025710	Polyp	not recorded	not recorded	not recorded	-	56.18
SRR23025713	Polyp	not recorded	not recorded	not recorded	-	53.35
SRR23025711	Polyp	not recorded	not recorded	not recorded	-	45.14
SRR7746666	Polyp	not recorded	not recorded	not recorded	-	38.68

Source: CnidoSite RNA-seq expression matrices (LPERT_TPM, StringTie quantification over 110 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.