Gene detail

Detailed information of OS493_030213-T1 in Lophelia pertusa

Genomic Location: scaffold_191:504396...514732
NR annotation: KAJ7354795.1, Exocyst complex component 8 [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q5U247	Exocyst complex component 8 OS=Xenopus laevis OX=8355 GN=exoc8 PE=2 SV=1
Q5ZJ43	Exocyst complex component 8 OS=Gallus gallus OX=9031 GN=EXOC8 PE=2 SV=1
O54924	Exocyst complex component 8 OS=Rattus norvegicus OX=10116 GN=Exoc8 PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0004524 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF16528 all species →	Exo84_C	Exocyst component 84 C-terminal	Repeat	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR042560 all species →	Homologous_superfamily	Exocyst component Exo84, C-terminal, subdomain 2	Interproscan
IPR016159 all species →	Homologous_superfamily	Cullin repeat-like-containing domain superfamily	Interproscan
IPR032403 all species →	Domain	Exocyst component Exo84, C-terminal	Interproscan
IPR033961 all species →	Family	Exocyst complex component Exo84	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR21426 all species →	EXOCYST COMPLEX COMPONENT 8	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0000145 all species →	Cellular Component	exocyst	Interproscan
GO:0006887 all species →	Biological Process	exocytosis	Interproscan
GO:0006893 all species →	Biological Process	Golgi to plasma membrane transport	Interproscan
GO:0008104 all species →	Biological Process	protein localization	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for OS493_030213-T1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of OS493_030213-T1 across 110 RNA-seq samples of Lophelia pertusa. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

110Samples

107TPM > 0

7Conditions

32.1Max TPM

13.9Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
polyp at pH7 9	18	18	15.39	19.30
polyp at pH7 6	18	17	13.08	18.89
coral polyp · control treatment	16	16	14.02	18.55
coral polyp · oil and dispersant treatment	16	15	12.14	18.85
coral polyp · oil treatment	16	16	15.47	20.25
coral polyp · dispersant treatment	16	16	12.79	21.90
Polyp	10	9	14.97	32.09

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR11359498	polyp at pH7 9	not recorded	not recorded	not recorded	-	19.30
SRR11359494	polyp at pH7 9	not recorded	not recorded	not recorded	-	18.98
SRR11359519	polyp at pH7 9	not recorded	not recorded	not recorded	-	17.96
SRR11359499	polyp at pH7 9	not recorded	not recorded	not recorded	-	17.88
SRR11359496	polyp at pH7 9	not recorded	not recorded	not recorded	-	17.52
SRR11359497	polyp at pH7 9	not recorded	not recorded	not recorded	-	17.13
SRR11359506	polyp at pH7 9	not recorded	not recorded	not recorded	-	16.44
SRR11359523	polyp at pH7 9	not recorded	not recorded	not recorded	-	16.33
SRR11359507	polyp at pH7 9	not recorded	not recorded	not recorded	-	15.44
SRR11359509	polyp at pH7 9	not recorded	not recorded	not recorded	-	14.65
SRR11359521	polyp at pH7 9	not recorded	not recorded	not recorded	-	14.36
SRR11359518	polyp at pH7 9	not recorded	not recorded	not recorded	-	14.25
SRR11359522	polyp at pH7 9	not recorded	not recorded	not recorded	-	14.11
SRR11359510	polyp at pH7 9	not recorded	not recorded	not recorded	-	14.07
SRR11359520	polyp at pH7 9	not recorded	not recorded	not recorded	-	13.20
SRR11359511	polyp at pH7 9	not recorded	not recorded	not recorded	-	12.98
SRR11359508	polyp at pH7 9	not recorded	not recorded	not recorded	-	11.89
SRR11359495	polyp at pH7 9	not recorded	not recorded	not recorded	-	10.45
SRR11359516	polyp at pH7 6	not recorded	not recorded	not recorded	-	18.89
SRR11359501	polyp at pH7 6	not recorded	not recorded	not recorded	-	18.53
SRR11359517	polyp at pH7 6	not recorded	not recorded	not recorded	-	17.31
SRR11359502	polyp at pH7 6	not recorded	not recorded	not recorded	-	15.06
SRR11359505	polyp at pH7 6	not recorded	not recorded	not recorded	-	14.71
SRR11359500	polyp at pH7 6	not recorded	not recorded	not recorded	-	14.62
SRR11359515	polyp at pH7 6	not recorded	not recorded	not recorded	-	14.40
SRR11359504	polyp at pH7 6	not recorded	not recorded	not recorded	-	14.37
SRR11359528	polyp at pH7 6	not recorded	not recorded	not recorded	-	13.53
SRR11359525	polyp at pH7 6	not recorded	not recorded	not recorded	-	13.25
SRR11359514	polyp at pH7 6	not recorded	not recorded	not recorded	-	13.11
SRR11359512	polyp at pH7 6	not recorded	not recorded	not recorded	-	12.82
SRR11359529	polyp at pH7 6	not recorded	not recorded	not recorded	-	12.69
SRR11359503	polyp at pH7 6	not recorded	not recorded	not recorded	-	12.43
SRR11359526	polyp at pH7 6	not recorded	not recorded	not recorded	-	11.85
SRR11359527	polyp at pH7 6	not recorded	not recorded	not recorded	-	11.59
SRR11359513	polyp at pH7 6	not recorded	not recorded	not recorded	-	6.30
SRR11359524	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR16705970	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	18.55
SRR16705960	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	18.42
SRR16705973	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	16.21
SRR16705942	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	16.16
SRR16705974	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	15.54
SRR16705991	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	15.30
SRR16705946	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	15.13
SRR16705957	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	15.08
SRR16705972	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	14.75
SRR16705943	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	13.04
SRR16705992	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	12.64
SRR16705971	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	12.16
SRR16705989	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	11.36
SRR16705990	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	10.32
SRR16705965	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	9.92
SRR16705975	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	9.81
SRR16705982	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	18.85
SRR16706004	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	15.56
SRR16705997	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	15.28
SRR16705976	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	13.97
SRR16706005	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	13.80
SRR16705996	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	13.08
SRR16705944	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	12.56
SRR16705979	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	12.54
SRR16705993	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	12.46
SRR16705994	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	12.10
SRR16705947	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	11.75
SRR16705978	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	11.58
SRR16705945	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	10.73
SRR16705995	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	10.22
SRR16705948	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	9.72
SRR16705977	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	0.00
SRR16705963	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	20.25
SRR16705998	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	19.95
SRR16705964	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	17.08
SRR16706000	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	16.59
SRR16705980	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	16.55
SRR16705951	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	16.54
SRR16705983	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	16.11
SRR16705962	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	15.71
SRR16705949	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	15.26
SRR16705950	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	14.81
SRR16705999	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	14.77
SRR16706001	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	14.56
SRR16705984	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	13.14
SRR16705961	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	13.11
SRR16705952	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	11.79
SRR16705981	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	11.33
SRR16705985	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	21.90
SRR16706003	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	19.11
SRR16705958	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	17.16
SRR16705959	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	14.99
SRR16706002	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	14.68
SRR16705966	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	13.44
SRR16705954	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	13.35
SRR16705955	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	11.96
SRR16705988	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	11.30
SRR16705969	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	10.92
SRR16705987	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	10.63
SRR16705953	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	10.38
SRR16705986	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	9.80
SRR16705967	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	9.42
SRR16705956	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	8.67
SRR16705968	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	6.97
SRR23025713	Polyp	not recorded	not recorded	not recorded	-	32.09
SRR23025710	Polyp	not recorded	not recorded	not recorded	-	23.34
SRR23025708	Polyp	not recorded	not recorded	not recorded	-	20.74
SRR23025711	Polyp	not recorded	not recorded	not recorded	-	18.94
SRR23025709	Polyp	not recorded	not recorded	not recorded	-	16.69
SRR23025712	Polyp	not recorded	not recorded	not recorded	-	12.68
SRR7746666	Polyp	not recorded	not recorded	not recorded	-	10.01
SRR7746668	Polyp	not recorded	not recorded	not recorded	-	7.62
SRR7746667	Polyp	not recorded	not recorded	not recorded	-	7.56
SRR7746669	Polyp	not recorded	not recorded	not recorded	-	0.00

Source: CnidoSite RNA-seq expression matrices (LPERT_TPM, StringTie quantification over 110 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.