Gene detail

Detailed information of OS493_030218-T1 in Lophelia pertusa

Genomic Location: scaffold_191:693753...694125
NR annotation: KAJ7354797.1, Exocyst complex component 8 [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q5U247	Exocyst complex component 8 OS=Xenopus laevis OX=8355 GN=exoc8 PE=2 SV=1
A4IF89	Exocyst complex component 8 OS=Bos taurus OX=9913 GN=EXOC8 PE=2 SV=1
Q8IYI6	Exocyst complex component 8 OS=Homo sapiens OX=9606 GN=EXOC8 PE=1 SV=2

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0004524 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF08700 all species →	VPS51_Exo84_N	Vps51/EXO84/COG1 N-terminal	Repeat	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR033961 all species →	Family	Exocyst complex component Exo84	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR21426 all species →	EXOCYST COMPLEX COMPONENT 8	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0000145 all species →	Cellular Component	exocyst	Interproscan
GO:0006887 all species →	Biological Process	exocytosis	Interproscan
GO:0006893 all species →	Biological Process	Golgi to plasma membrane transport	Interproscan
GO:0008104 all species →	Biological Process	protein localization	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for OS493_030218-T1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of OS493_030218-T1 across 110 RNA-seq samples of Lophelia pertusa. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

110Samples

101TPM > 0

7Conditions

30.6Max TPM

7.1Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
polyp at pH7 9	18	15	4.06	8.30
polyp at pH7 6	18	12	3.51	7.06
coral polyp · control treatment	16	16	8.78	18.86
coral polyp · oil and dispersant treatment	16	16	9.27	30.60
coral polyp · oil treatment	16	16	7.78	12.52
coral polyp · dispersant treatment	16	16	11.22	19.95
Polyp	10	10	4.75	7.67

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR11359494	polyp at pH7 9	not recorded	not recorded	not recorded	-	8.30
SRR11359511	polyp at pH7 9	not recorded	not recorded	not recorded	-	7.11
SRR11359509	polyp at pH7 9	not recorded	not recorded	not recorded	-	6.82
SRR11359497	polyp at pH7 9	not recorded	not recorded	not recorded	-	6.72
SRR11359522	polyp at pH7 9	not recorded	not recorded	not recorded	-	5.74
SRR11359508	polyp at pH7 9	not recorded	not recorded	not recorded	-	5.56
SRR11359499	polyp at pH7 9	not recorded	not recorded	not recorded	-	5.48
SRR11359519	polyp at pH7 9	not recorded	not recorded	not recorded	-	4.96
SRR11359498	polyp at pH7 9	not recorded	not recorded	not recorded	-	4.72
SRR11359496	polyp at pH7 9	not recorded	not recorded	not recorded	-	4.52
SRR11359507	polyp at pH7 9	not recorded	not recorded	not recorded	-	4.43
SRR11359523	polyp at pH7 9	not recorded	not recorded	not recorded	-	3.32
SRR11359510	polyp at pH7 9	not recorded	not recorded	not recorded	-	3.32
SRR11359520	polyp at pH7 9	not recorded	not recorded	not recorded	-	1.37
SRR11359521	polyp at pH7 9	not recorded	not recorded	not recorded	-	0.62
SRR11359495	polyp at pH7 9	not recorded	not recorded	not recorded	-	0.00
SRR11359506	polyp at pH7 9	not recorded	not recorded	not recorded	-	0.00
SRR11359518	polyp at pH7 9	not recorded	not recorded	not recorded	-	0.00
SRR11359516	polyp at pH7 6	not recorded	not recorded	not recorded	-	7.06
SRR11359503	polyp at pH7 6	not recorded	not recorded	not recorded	-	6.84
SRR11359502	polyp at pH7 6	not recorded	not recorded	not recorded	-	6.75
SRR11359528	polyp at pH7 6	not recorded	not recorded	not recorded	-	6.58
SRR11359515	polyp at pH7 6	not recorded	not recorded	not recorded	-	5.79
SRR11359517	polyp at pH7 6	not recorded	not recorded	not recorded	-	5.66
SRR11359514	polyp at pH7 6	not recorded	not recorded	not recorded	-	5.57
SRR11359529	polyp at pH7 6	not recorded	not recorded	not recorded	-	5.14
SRR11359504	polyp at pH7 6	not recorded	not recorded	not recorded	-	4.35
SRR11359505	polyp at pH7 6	not recorded	not recorded	not recorded	-	4.06
SRR11359527	polyp at pH7 6	not recorded	not recorded	not recorded	-	2.96
SRR11359501	polyp at pH7 6	not recorded	not recorded	not recorded	-	2.46
SRR11359500	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR11359512	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR11359513	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR11359524	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR11359525	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR11359526	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR16705973	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	18.86
SRR16705972	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	13.40
SRR16705974	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	13.23
SRR16705960	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	12.33
SRR16705990	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	10.78
SRR16705991	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	10.66
SRR16705942	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	9.88
SRR16705965	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	8.43
SRR16705946	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	7.77
SRR16705975	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	7.32
SRR16705957	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	6.69
SRR16705971	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	6.64
SRR16705989	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	4.14
SRR16705943	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	3.74
SRR16705970	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	3.74
SRR16705992	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	2.90
SRR16705977	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	30.60
SRR16705997	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	11.55
SRR16705978	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	11.23
SRR16705993	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	11.10
SRR16705982	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	11.10
SRR16705979	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	9.47
SRR16705996	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	8.91
SRR16706004	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	8.06
SRR16706005	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	8.05
SRR16705948	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	7.33
SRR16705944	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	7.33
SRR16705976	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	6.99
SRR16705995	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	6.77
SRR16705994	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	3.86
SRR16705947	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	3.57
SRR16705945	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	2.32
SRR16705999	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	12.52
SRR16706001	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	11.56
SRR16705949	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	10.98
SRR16705998	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	10.09
SRR16705950	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	9.15
SRR16705952	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	9.10
SRR16705964	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	9.07
SRR16706000	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	8.93
SRR16705981	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	7.69
SRR16705951	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	7.60
SRR16705984	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	7.26
SRR16705963	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	5.75
SRR16705961	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	5.73
SRR16705983	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	5.42
SRR16705980	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	3.32
SRR16705962	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	0.30
SRR16705954	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	19.95
SRR16705958	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	19.80
SRR16706002	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	16.56
SRR16705955	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	15.50
SRR16705967	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	14.19
SRR16705959	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	13.90
SRR16705988	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	13.39
SRR16705987	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	11.08
SRR16705968	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	10.47
SRR16705986	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	10.44
SRR16705969	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	9.30
SRR16706003	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	8.37
SRR16705956	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	6.22
SRR16705966	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	5.46
SRR16705985	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	3.00
SRR16705953	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.96
SRR7746669	Polyp	not recorded	not recorded	not recorded	-	7.67
SRR23025709	Polyp	not recorded	not recorded	not recorded	-	6.45
SRR23025711	Polyp	not recorded	not recorded	not recorded	-	6.40
SRR23025713	Polyp	not recorded	not recorded	not recorded	-	5.55
SRR7746666	Polyp	not recorded	not recorded	not recorded	-	5.04
SRR23025708	Polyp	not recorded	not recorded	not recorded	-	4.81
SRR7746668	Polyp	not recorded	not recorded	not recorded	-	3.94
SRR23025710	Polyp	not recorded	not recorded	not recorded	-	3.27
SRR23025712	Polyp	not recorded	not recorded	not recorded	-	2.75
SRR7746667	Polyp	not recorded	not recorded	not recorded	-	1.63

Source: CnidoSite RNA-seq expression matrices (LPERT_TPM, StringTie quantification over 110 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.