Gene detail

Detailed information of OS493_030221-T1 in Lophelia pertusa

Genomic Location: scaffold_192:324...10310
NR annotation: KAJ7324048.1, Rho guanine nucleotide exchange factor 4, partial [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

OS493_030221-T1

ATGATTGATACCTTTCAAAGCAATAATTATGCGCAGGATTTTTCTGATGTAAAATCAACAATTGGTGAGATCAGTGGTGGAAATCAACCCATAGAACACGGAATCGCCGAAGAAAAACTCACTTGTGAAAACACGCAACCTTTTATACCAAATGACAAAGTAAACAAAGAAGAAGAAGTTTGCGAAGAAAACTTTTGTTCTTCGAATTTTGGACAAACAGAGGACAACGGCTCATCGCAACAAGGAGATTGTTTATTTTGCGGGAAAACAAGAAGACATTTGACAGCCGATGGCGAGTTAATGCGATGTCAGCCTTCTGATCCGTCAAGGAAAATAAATGCCGGCGCAATAAGCGAACAAAAATTGCGTGATCATATCTCAGCGGAGTTAATTACTTGCGGCTTACGCGAGATTTGCAACGGAGGCCACGGATTGGCTAGAAATATTAATAGAGTGAACAGTTTGCCTAACTCGCCTGTGGAATCTTTATTACATGTAGCAAATTCAACAAATATGCATAGCAGCTTCCCAGACATCAGAAAATTACATGCTCATCATTTATCACCAAAACTCTCAGATAGCAGTGATAGTTTATCATGCTGTAGCTTACATGTGGAAGACAGCTTTGAAAACGAAAACAATTCAAGTTTTGACAGCAATGGCAAGAAAAAACGTCCATCACTTTCTATTGACCTTTCAAAATGTAGGAAACACGGAGGGCTCATGAGAACCCACTTAGGCCCGGAATATCAAGAGGAGAGGCAGCGTTCCCGGAGTGCGAGGATACCCTATAGGTCACCAGTTCAACAGGTGCTTAAGACAGAGAATCGTTCAGTTTCTTGTTCCCAGTTGGACAAGAATGGTAACAATAGCCCTACATCTACCAGCCCACCTTATGTCAGACCACGGATTCAAAGTCTTGAGGAGCTGCCGCCGTGCACCGCAGAGGTGATCCTTAGGAAGAAGAAAAGCATCATTAGGAAAACCAGAATGAAGCACACCGCCTCTCTATCTTTTGTCGACAATGTGTTTAATAATGTATTCGACAAGGGCAAGCGCCATTCATATGGTGGTTATGACGACATCACTTTTCTTCAGCTCCCGCATCTGTTGCAGAGATCCCACAGCACAGAAAGCCAATTAGACAGTTGCAACAGTTCTATTCAATCTCTCAACTCGTCATCATCTTTCACAGAGAATGAGCTCGGAAGTACTTTCTCTGTCATGTCAGAGCTCTCCATCCCTGGTGCCTTTGATCAGAGTTTGGGTCGTTCACGCAGTGTACCTGGGTATCTTGGTGTTGCCGGCAGCCCTCAGACCTCACCCATCCCAGAAGAACGTGCTTCAGTGTCGGACATGGAGTGGCCTTCCAAATCAGACGTGAATAGTGATGATGACGATGATGATGTGGATGGTGAGATGGATGTGCCAGAAGCTTTTGCGGAAGCGCTGTGGGATCACGTGACCATGGACCCGGAAGAGCTGAGTTTCCAAGCGGGTGACATCATCACTGTGCTGACCATGACGTCAGTGGAGTGGTGGTTCGGACAGGTTGGGGACCGGATTGGCTGGTTTCCTGCGCCATTTGTTCGGGTTCGCGTGTCCCAGACGCTAGCCGCTGACGAAACCAAACTTGGCCCTCCCGTGCGAACAAGGAAAGGAACCAATGAGGGCTTTCTGTCTGACACTGTTGTCAGGTCACGTGTCGTGCTAGAGATCCTCAACACGGAGAGAGATTACGTCAAGCACCTGGAGGATGTGGTCGAGGGTTATCTTAAACAAGCTCGTAAACGAACAGACATGTTTAGCGAGGATCAGATTACAAAGATCTTTTCCAACATCGAGCAGCTTTACGAGTTTCATCAGGAAATATTGCGGCAGTTGGAGGAGTGCTTTGTGGAGGAAGATCCTTGTGCGTCTGAAATTGGCGCCGTCTTTCTAAATAACCCACTAGTTGTTCGTGAAGTCAATCGATTCTTATGGCCTTTCTTTTCATCTGTTGCACGTTATAGCAAAAAGGCTTCGACATTTACTCGGAGTACTGCAACAAACCATCCTCATGCCATGGCGGAGCTCAAGACCCTCTGTGAAAGCAACAAATACAAGCAGTTCTTTGAGGCTTGCCGCCTTCTTCAGGATATGATTAGTATATCGCTGGATGGATTTTTGTTGACACCGGTGCAAAAGATTTGTAAATATCCCCTGCAGTTAGCG

Transcript

OS493_030221-T1

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q9NR80	Rho guanine nucleotide exchange factor 4 OS=Homo sapiens OX=9606 GN=ARHGEF4 PE=1 SV=3
Q5DU57	Spermatogenesis-associated protein 13 OS=Mus musculus OX=10090 GN=Spata13 PE=1 SV=2
Q96N96	Spermatogenesis-associated protein 13 OS=Homo sapiens OX=9606 GN=SPATA13 PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0003864 (this species only)
Ubiquitin family	UBD\|Other\|SH3 · all ubiquitin genes in this species

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00621 all species →	RhoGEF	RhoGEF domain	Domain	Interproscan
PF00018 all species →	SH3_1	SH3 domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001452 all species →	Domain	SH3 domain	Interproscan
IPR000219 all species →	Domain	Dbl homology (DH) domain	Interproscan
IPR053086 all species →	Family	RhoGEF domain-containing protein	Interproscan
IPR035899 all species →	Homologous_superfamily	Dbl homology (DH) domain superfamily	Interproscan
IPR036028 all species →	Homologous_superfamily	SH3-like domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR45834 all species →	RHO GUANINE NUCLEOTIDE EXCHANGE FACTOR 9-RELATED	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005515 all species →	Molecular Function	protein binding	Interproscan
GO:0005085 all species →	Molecular Function	guanyl-nucleotide exchange factor activity	Interproscan
GO:0005829 all species →	Cellular Component	cytosol	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for OS493_030221-T1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern

Expression trend for OS493_030221-T1 global co-expression network