Detailed information of OS493_030273-T1 in Lophelia pertusa

Genomic Location: scaffold_193:334213...355236
NR annotation: KAJ7389587.1, AP-3 complex subunit beta-2 [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families


 Gene Structure
More details in JBrowse  Sequence
CDS
Transcript
Protein
 UniProt (Swiss-Prot top hit)
UniProt accessionDescription
Q7YRF1AP-3 complex subunit beta-1 OS=Canis lupus familiaris OX=9615 GN=AP3B1 PE=2 SV=1
Q32PG1AP-3 complex subunit beta-1 OS=Bos taurus OX=9913 GN=AP3B1 PE=2 SV=1
O00203AP-3 complex subunit beta-1 OS=Homo sapiens OX=9606 GN=AP3B1 PE=1 SV=3
 Gene family
Family typeMembership / link
Orthogroup (gene family)OG0003541 (this species only)

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF01602
all species →		Adaptin_NAdaptin N terminal regionRepeatInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR016024
all species →		Homologous_superfamilyArmadillo-type foldInterproscan
IPR002553
all species →		DomainClathrin/coatomer adaptor, adaptin-like, N-terminalInterproscan
IPR026739
all species →		FamilyAP complex subunit betaInterproscan
IPR011989
all species →		Homologous_superfamilyArmadillo-like helicalInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR11134
all species →		ADAPTOR COMPLEX SUBUNIT BETA FAMILY MEMBERInterproscan

 Gene Ontology
GO termCategoryDescriptionSource
GO:0006886
all species →		Biological Processintracellular protein transportInterproscan
GO:0016192
all species →		Biological Processvesicle-mediated transportInterproscan
GO:0030117
all species →		Cellular Componentmembrane coatInterproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.
 KEGG pathway
No KEGG orthology assignment for OS493_030273-T1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.
Expression pattern
 Expression trend for OS493_030273-T1 global co-expression network
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