Gene detail

Detailed information of OS493_030276-T1 in Lophelia pertusa

Genomic Location: scaffold_193:399505...400997
NR annotation: KAJ7389590.1, hypothetical protein OS493_030276 [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
A6QQM4	Zinc finger protein 474 OS=Bos taurus OX=9913 GN=ZNF474 PE=2 SV=1
Q6V5K9	Zinc finger protein 474 OS=Mus musculus OX=10090 GN=Znf474 PE=2 SV=2
Q4R8T4	Zinc finger protein 474 OS=Macaca fascicularis OX=9541 GN=ZNF474 PE=2 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0008213 (this species only) · gene tree & orthology

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF13913 all species →	zf-C2HC_2	zinc-finger of a C2HC-type	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR049899 all species →	Domain	Zinc finger, C2HC/C3H-type	Interproscan
IPR026319 all species →	Family	Zinc finger C2HC domain-containing protein 1A/B-like	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR13555 all species →	C2H2 ZINC FINGER CGI-62-RELATED	Interproscan

Gene Ontology

No Gene Ontology signature was recorded for OS493_030276-T1 in Lophelia pertusa.

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for OS493_030276-T1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of OS493_030276-T1 across 110 RNA-seq samples of Lophelia pertusa. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

110Samples

109TPM > 0

7Conditions

42.4Max TPM

9.5Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
polyp at pH7 9	18	18	5.14	8.06
polyp at pH7 6	18	18	4.89	8.47
coral polyp · control treatment	16	16	10.61	21.20
coral polyp · oil and dispersant treatment	16	16	15.34	22.95
coral polyp · oil treatment	16	16	8.23	13.44
coral polyp · dispersant treatment	16	16	17.46	42.41
Polyp	10	9	3.30	6.13

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR11359522	polyp at pH7 9	not recorded	not recorded	not recorded	-	8.06
SRR11359521	polyp at pH7 9	not recorded	not recorded	not recorded	-	7.63
SRR11359520	polyp at pH7 9	not recorded	not recorded	not recorded	-	7.15
SRR11359495	polyp at pH7 9	not recorded	not recorded	not recorded	-	7.03
SRR11359523	polyp at pH7 9	not recorded	not recorded	not recorded	-	6.81
SRR11359510	polyp at pH7 9	not recorded	not recorded	not recorded	-	5.56
SRR11359494	polyp at pH7 9	not recorded	not recorded	not recorded	-	5.15
SRR11359509	polyp at pH7 9	not recorded	not recorded	not recorded	-	5.02
SRR11359498	polyp at pH7 9	not recorded	not recorded	not recorded	-	5.01
SRR11359497	polyp at pH7 9	not recorded	not recorded	not recorded	-	4.98
SRR11359496	polyp at pH7 9	not recorded	not recorded	not recorded	-	4.86
SRR11359518	polyp at pH7 9	not recorded	not recorded	not recorded	-	4.57
SRR11359499	polyp at pH7 9	not recorded	not recorded	not recorded	-	4.35
SRR11359508	polyp at pH7 9	not recorded	not recorded	not recorded	-	4.12
SRR11359519	polyp at pH7 9	not recorded	not recorded	not recorded	-	3.51
SRR11359511	polyp at pH7 9	not recorded	not recorded	not recorded	-	3.46
SRR11359506	polyp at pH7 9	not recorded	not recorded	not recorded	-	3.44
SRR11359507	polyp at pH7 9	not recorded	not recorded	not recorded	-	1.82
SRR11359515	polyp at pH7 6	not recorded	not recorded	not recorded	-	8.47
SRR11359514	polyp at pH7 6	not recorded	not recorded	not recorded	-	7.50
SRR11359526	polyp at pH7 6	not recorded	not recorded	not recorded	-	7.25
SRR11359503	polyp at pH7 6	not recorded	not recorded	not recorded	-	6.91
SRR11359502	polyp at pH7 6	not recorded	not recorded	not recorded	-	6.42
SRR11359527	polyp at pH7 6	not recorded	not recorded	not recorded	-	5.69
SRR11359512	polyp at pH7 6	not recorded	not recorded	not recorded	-	4.55
SRR11359529	polyp at pH7 6	not recorded	not recorded	not recorded	-	4.43
SRR11359504	polyp at pH7 6	not recorded	not recorded	not recorded	-	4.43
SRR11359505	polyp at pH7 6	not recorded	not recorded	not recorded	-	4.43
SRR11359528	polyp at pH7 6	not recorded	not recorded	not recorded	-	4.29
SRR11359500	polyp at pH7 6	not recorded	not recorded	not recorded	-	4.20
SRR11359524	polyp at pH7 6	not recorded	not recorded	not recorded	-	3.95
SRR11359501	polyp at pH7 6	not recorded	not recorded	not recorded	-	3.71
SRR11359525	polyp at pH7 6	not recorded	not recorded	not recorded	-	3.60
SRR11359513	polyp at pH7 6	not recorded	not recorded	not recorded	-	3.49
SRR11359517	polyp at pH7 6	not recorded	not recorded	not recorded	-	2.41
SRR11359516	polyp at pH7 6	not recorded	not recorded	not recorded	-	2.23
SRR16705990	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	21.20
SRR16705972	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	15.15
SRR16705942	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	14.22
SRR16705960	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	14.20
SRR16705971	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	12.37
SRR16705965	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	11.92
SRR16705974	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	11.77
SRR16705989	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	10.89
SRR16705957	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	10.30
SRR16705991	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	8.93
SRR16705975	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	8.69
SRR16705943	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	7.67
SRR16705946	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	7.47
SRR16705970	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	6.81
SRR16705973	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	4.88
SRR16705992	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	3.32
SRR16705978	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	22.95
SRR16705993	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	21.80
SRR16705944	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	21.36
SRR16706004	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	20.81
SRR16705995	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	20.03
SRR16705979	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	18.78
SRR16705996	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	18.48
SRR16706005	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	17.92
SRR16705997	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	14.88
SRR16705976	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	14.10
SRR16705945	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	12.73
SRR16705982	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	12.48
SRR16705948	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	11.94
SRR16705947	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	10.23
SRR16705994	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	3.73
SRR16705977	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	3.22
SRR16706000	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	13.44
SRR16705949	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	12.20
SRR16705999	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	12.08
SRR16705952	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	10.63
SRR16705981	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	10.16
SRR16705983	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	10.07
SRR16705951	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	9.59
SRR16705998	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	9.20
SRR16706001	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	8.46
SRR16705963	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	8.06
SRR16705961	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	7.06
SRR16705984	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	6.69
SRR16705950	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	5.76
SRR16705980	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	4.04
SRR16705964	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	2.22
SRR16705962	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	1.95
SRR16705987	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	42.41
SRR16705968	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	31.17
SRR16705969	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	25.95
SRR16705958	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	25.37
SRR16705967	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	22.91
SRR16705955	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	19.73
SRR16705988	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	18.04
SRR16706002	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	14.87
SRR16705959	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	14.55
SRR16705954	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	14.23
SRR16705986	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	13.15
SRR16705966	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	12.56
SRR16705956	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	12.28
SRR16706003	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	8.81
SRR16705985	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2.77
SRR16705953	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.51
SRR23025710	Polyp	not recorded	not recorded	not recorded	-	6.13
SRR23025713	Polyp	not recorded	not recorded	not recorded	-	5.75
SRR23025708	Polyp	not recorded	not recorded	not recorded	-	4.77
SRR23025711	Polyp	not recorded	not recorded	not recorded	-	4.77
SRR7746666	Polyp	not recorded	not recorded	not recorded	-	3.40
SRR7746667	Polyp	not recorded	not recorded	not recorded	-	2.40
SRR7746668	Polyp	not recorded	not recorded	not recorded	-	2.12
SRR23025709	Polyp	not recorded	not recorded	not recorded	-	1.87
SRR23025712	Polyp	not recorded	not recorded	not recorded	-	1.78
SRR7746669	Polyp	not recorded	not recorded	not recorded	-	0.00

Source: CnidoSite RNA-seq expression matrices (LPERT_TPM, StringTie quantification over 110 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.