Gene detail

Detailed information of OS493_030314-T1 in Lophelia pertusa

Genomic Location: scaffold_194:295783...304310
NR annotation: KAJ7383162.1, hypothetical protein OS493_030314 [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
P53004	Biliverdin reductase A OS=Homo sapiens OX=9606 GN=BLVRA PE=1 SV=2
O26635	Peptide methionine sulfoxide reductase MsrA OS=Methanothermobacter thermautotrophicus (strain ATCC 29096 / DSM 1053 / JCM 10044 / NBRC 100330 / Delta H) OX=187420 GN=msrA PE=3 SV=1
Q9CY64	Biliverdin reductase A OS=Mus musculus OX=10090 GN=Blvra PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0004689 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF01625 all species →	PMSR	Peptide methionine sulfoxide reductase	Family	Interproscan
PF09166 all species →	Biliv-reduc_cat	Biliverdin reductase, catalytic	Domain	Interproscan
PF20939 all species →	MsrA_helical	Selenoprotein methionine sulfoxide reductase A, helical domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR036509 all species →	Homologous_superfamily	Peptide methionine sulphoxide reductase MsrA superfamily	Interproscan
IPR002569 all species →	Domain	Peptide methionine sulphoxide reductase MsrA domain	Interproscan
IPR015249 all species →	Domain	Biliverdin reductase, catalytic	Interproscan
IPR049006 all species →	Domain	Selenoprotein methionine sulfoxide reductase A, helical domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR43774 all species →	PEPTIDE METHIONINE SULFOXIDE REDUCTASE	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0008113 all species →	Molecular Function	peptide-methionine (S)-S-oxide reductase activity	Interproscan
GO:0004074 all species →	Molecular Function	biliverdin reductase [NAD(P)+] activity	Interproscan
GO:0008270 all species →	Molecular Function	zinc ion binding	Interproscan
GO:0042167 all species →	Biological Process	heme catabolic process	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for OS493_030314-T1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of OS493_030314-T1 across 110 RNA-seq samples of Lophelia pertusa. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

110Samples

110TPM > 0

7Conditions

2,157.3Max TPM

371.2Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
polyp at pH7 9	18	18	133.10	212.85
polyp at pH7 6	18	18	178.16	366.89
coral polyp · control treatment	16	16	382.24	1,079.64
coral polyp · oil and dispersant treatment	16	16	905.32	2,157.29
coral polyp · oil treatment	16	16	406.90	941.07
coral polyp · dispersant treatment	16	16	362.87	1,162.60
Polyp	10	10	231.21	696.74

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR11359522	polyp at pH7 9	not recorded	not recorded	not recorded	-	212.85
SRR11359523	polyp at pH7 9	not recorded	not recorded	not recorded	-	207.87
SRR11359495	polyp at pH7 9	not recorded	not recorded	not recorded	-	193.01
SRR11359498	polyp at pH7 9	not recorded	not recorded	not recorded	-	187.20
SRR11359494	polyp at pH7 9	not recorded	not recorded	not recorded	-	183.02
SRR11359499	polyp at pH7 9	not recorded	not recorded	not recorded	-	181.83
SRR11359518	polyp at pH7 9	not recorded	not recorded	not recorded	-	136.10
SRR11359519	polyp at pH7 9	not recorded	not recorded	not recorded	-	128.92
SRR11359497	polyp at pH7 9	not recorded	not recorded	not recorded	-	118.32
SRR11359496	polyp at pH7 9	not recorded	not recorded	not recorded	-	117.83
SRR11359506	polyp at pH7 9	not recorded	not recorded	not recorded	-	104.94
SRR11359507	polyp at pH7 9	not recorded	not recorded	not recorded	-	100.00
SRR11359521	polyp at pH7 9	not recorded	not recorded	not recorded	-	97.64
SRR11359520	polyp at pH7 9	not recorded	not recorded	not recorded	-	92.78
SRR11359510	polyp at pH7 9	not recorded	not recorded	not recorded	-	86.94
SRR11359511	polyp at pH7 9	not recorded	not recorded	not recorded	-	83.69
SRR11359509	polyp at pH7 9	not recorded	not recorded	not recorded	-	82.11
SRR11359508	polyp at pH7 9	not recorded	not recorded	not recorded	-	80.66
SRR11359529	polyp at pH7 6	not recorded	not recorded	not recorded	-	366.89
SRR11359528	polyp at pH7 6	not recorded	not recorded	not recorded	-	359.29
SRR11359526	polyp at pH7 6	not recorded	not recorded	not recorded	-	204.83
SRR11359527	polyp at pH7 6	not recorded	not recorded	not recorded	-	203.47
SRR11359505	polyp at pH7 6	not recorded	not recorded	not recorded	-	200.02
SRR11359517	polyp at pH7 6	not recorded	not recorded	not recorded	-	199.06
SRR11359504	polyp at pH7 6	not recorded	not recorded	not recorded	-	198.16
SRR11359516	polyp at pH7 6	not recorded	not recorded	not recorded	-	194.37
SRR11359502	polyp at pH7 6	not recorded	not recorded	not recorded	-	150.80
SRR11359503	polyp at pH7 6	not recorded	not recorded	not recorded	-	146.35
SRR11359513	polyp at pH7 6	not recorded	not recorded	not recorded	-	139.39
SRR11359514	polyp at pH7 6	not recorded	not recorded	not recorded	-	138.23
SRR11359515	polyp at pH7 6	not recorded	not recorded	not recorded	-	136.83
SRR11359512	polyp at pH7 6	not recorded	not recorded	not recorded	-	129.82
SRR11359524	polyp at pH7 6	not recorded	not recorded	not recorded	-	124.19
SRR11359525	polyp at pH7 6	not recorded	not recorded	not recorded	-	120.49
SRR11359500	polyp at pH7 6	not recorded	not recorded	not recorded	-	98.69
SRR11359501	polyp at pH7 6	not recorded	not recorded	not recorded	-	96.06
SRR16705990	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	1,079.64
SRR16705989	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	643.63
SRR16705946	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	560.19
SRR16705991	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	484.16
SRR16705965	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	390.42
SRR16705972	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	384.50
SRR16705992	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	383.85
SRR16705960	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	343.52
SRR16705974	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	314.89
SRR16705971	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	286.36
SRR16705957	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	269.47
SRR16705973	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	258.55
SRR16705970	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	212.57
SRR16705943	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	196.13
SRR16705942	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	183.43
SRR16705975	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	124.50
SRR16705945	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	2,157.29
SRR16705996	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	1,788.24
SRR16705995	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	1,683.21
SRR16705947	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	1,411.70
SRR16705994	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	1,342.97
SRR16705944	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	1,037.29
SRR16705978	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	993.36
SRR16706004	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	619.35
SRR16705993	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	604.41
SRR16705976	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	588.39
SRR16705982	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	483.05
SRR16705979	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	426.74
SRR16705977	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	397.52
SRR16705997	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	369.46
SRR16706005	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	313.64
SRR16705948	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	268.48
SRR16705983	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	941.07
SRR16705981	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	871.96
SRR16705963	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	697.83
SRR16705961	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	583.56
SRR16705980	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	572.91
SRR16706000	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	415.38
SRR16705949	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	390.12
SRR16705984	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	351.21
SRR16705951	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	340.72
SRR16705999	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	315.37
SRR16705962	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	241.77
SRR16705950	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	213.07
SRR16705998	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	212.20
SRR16705952	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	149.17
SRR16706001	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	119.16
SRR16705964	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	94.85
SRR16705987	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1,162.60
SRR16705966	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	597.10
SRR16705968	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	573.97
SRR16705958	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	542.99
SRR16705967	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	536.12
SRR16705985	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	450.73
SRR16705955	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	305.11
SRR16706002	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	295.56
SRR16705969	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	240.62
SRR16705986	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	210.23
SRR16706003	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	204.41
SRR16705954	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	197.63
SRR16705988	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	159.20
SRR16705953	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	127.25
SRR16705959	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	109.75
SRR16705956	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	92.74
SRR7746667	Polyp	not recorded	not recorded	not recorded	-	696.74
SRR7746668	Polyp	not recorded	not recorded	not recorded	-	631.28
SRR7746669	Polyp	not recorded	not recorded	not recorded	-	351.07
SRR23025710	Polyp	not recorded	not recorded	not recorded	-	174.01
SRR23025712	Polyp	not recorded	not recorded	not recorded	-	111.02
SRR23025713	Polyp	not recorded	not recorded	not recorded	-	104.77
SRR23025708	Polyp	not recorded	not recorded	not recorded	-	86.95
SRR23025711	Polyp	not recorded	not recorded	not recorded	-	59.74
SRR23025709	Polyp	not recorded	not recorded	not recorded	-	50.70
SRR7746666	Polyp	not recorded	not recorded	not recorded	-	45.81

Source: CnidoSite RNA-seq expression matrices (LPERT_TPM, StringTie quantification over 110 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.