Gene detail

Detailed information of OS493_030322-T1 in Lophelia pertusa

Genomic Location: scaffold_194:424322...430548
NR annotation: KAJ7383169.1, hypothetical protein OS493_030322 [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q8QZR1	Tyrosine aminotransferase OS=Mus musculus OX=10090 GN=Tat PE=1 SV=1
P04694	Tyrosine aminotransferase OS=Rattus norvegicus OX=10116 GN=Tat PE=1 SV=1
P17735	Tyrosine aminotransferase OS=Homo sapiens OX=9606 GN=TAT PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0002933 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00155 all species →	Aminotran_1_2	Aminotransferase class I and II	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR015422 all species →	Homologous_superfamily	Pyridoxal phosphate-dependent transferase, small domain	Interproscan
IPR015424 all species →	Homologous_superfamily	Pyridoxal phosphate-dependent transferase	Interproscan
IPR004839 all species →	Domain	Aminotransferase, class I/classII	Interproscan
IPR005958 all species →	Family	Tyrosine/nicotianamine aminotransferase	Interproscan
IPR015421 all species →	Homologous_superfamily	Pyridoxal phosphate-dependent transferase, major domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR45744 all species →	TYROSINE AMINOTRANSFERASE	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0009058 all species →	Biological Process	biosynthetic process	Interproscan
GO:0030170 all species →	Molecular Function	pyridoxal phosphate binding	Interproscan
GO:0006520 all species →	Biological Process	amino acid metabolic process	Interproscan
GO:0008483 all species →	Molecular Function	transaminase activity	Interproscan
GO:0004838 all species →	Molecular Function	L-tyrosine-2-oxoglutarate transaminase activity	Interproscan
GO:0006559 all species →	Biological Process	L-phenylalanine catabolic process	Interproscan
GO:0006572 all species →	Biological Process	tyrosine catabolic process	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K00815	TAT; tyrosine aminotransferase	EC:2.6.1.5	Amino acid related enzymes	ko01007	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of OS493_030322-T1 across 110 RNA-seq samples of Lophelia pertusa. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

110Samples

107TPM > 0

7Conditions

158.0Max TPM

19.9Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
polyp at pH7 9	18	18	4.67	9.61
polyp at pH7 6	18	15	5.14	9.82
coral polyp · control treatment	16	16	22.25	70.13
coral polyp · oil and dispersant treatment	16	16	52.60	158.00
coral polyp · oil treatment	16	16	13.98	29.38
coral polyp · dispersant treatment	16	16	34.03	149.97
Polyp	10	10	4.34	7.28

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR11359498	polyp at pH7 9	not recorded	not recorded	not recorded	-	9.61
SRR11359523	polyp at pH7 9	not recorded	not recorded	not recorded	-	9.10
SRR11359499	polyp at pH7 9	not recorded	not recorded	not recorded	-	8.44
SRR11359522	polyp at pH7 9	not recorded	not recorded	not recorded	-	7.65
SRR11359521	polyp at pH7 9	not recorded	not recorded	not recorded	-	5.42
SRR11359497	polyp at pH7 9	not recorded	not recorded	not recorded	-	4.95
SRR11359520	polyp at pH7 9	not recorded	not recorded	not recorded	-	4.76
SRR11359518	polyp at pH7 9	not recorded	not recorded	not recorded	-	4.60
SRR11359494	polyp at pH7 9	not recorded	not recorded	not recorded	-	4.51
SRR11359496	polyp at pH7 9	not recorded	not recorded	not recorded	-	4.25
SRR11359507	polyp at pH7 9	not recorded	not recorded	not recorded	-	3.32
SRR11359509	polyp at pH7 9	not recorded	not recorded	not recorded	-	3.13
SRR11359506	polyp at pH7 9	not recorded	not recorded	not recorded	-	2.69
SRR11359508	polyp at pH7 9	not recorded	not recorded	not recorded	-	2.57
SRR11359510	polyp at pH7 9	not recorded	not recorded	not recorded	-	2.56
SRR11359511	polyp at pH7 9	not recorded	not recorded	not recorded	-	2.25
SRR11359519	polyp at pH7 9	not recorded	not recorded	not recorded	-	2.10
SRR11359495	polyp at pH7 9	not recorded	not recorded	not recorded	-	2.07
SRR11359504	polyp at pH7 6	not recorded	not recorded	not recorded	-	9.82
SRR11359505	polyp at pH7 6	not recorded	not recorded	not recorded	-	9.28
SRR11359529	polyp at pH7 6	not recorded	not recorded	not recorded	-	9.01
SRR11359528	polyp at pH7 6	not recorded	not recorded	not recorded	-	8.93
SRR11359514	polyp at pH7 6	not recorded	not recorded	not recorded	-	7.43
SRR11359515	polyp at pH7 6	not recorded	not recorded	not recorded	-	7.06
SRR11359512	polyp at pH7 6	not recorded	not recorded	not recorded	-	6.79
SRR11359516	polyp at pH7 6	not recorded	not recorded	not recorded	-	6.23
SRR11359527	polyp at pH7 6	not recorded	not recorded	not recorded	-	6.16
SRR11359517	polyp at pH7 6	not recorded	not recorded	not recorded	-	5.68
SRR11359526	polyp at pH7 6	not recorded	not recorded	not recorded	-	5.60
SRR11359503	polyp at pH7 6	not recorded	not recorded	not recorded	-	2.92
SRR11359500	polyp at pH7 6	not recorded	not recorded	not recorded	-	2.90
SRR11359513	polyp at pH7 6	not recorded	not recorded	not recorded	-	2.54
SRR11359502	polyp at pH7 6	not recorded	not recorded	not recorded	-	2.26
SRR11359501	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR11359524	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR11359525	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR16705990	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	70.13
SRR16705991	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	66.86
SRR16705989	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	34.94
SRR16705957	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	31.64
SRR16705960	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	23.66
SRR16705972	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	20.68
SRR16705946	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	18.88
SRR16705971	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	17.94
SRR16705992	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	14.84
SRR16705965	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	14.16
SRR16705942	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	11.89
SRR16705974	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	9.34
SRR16705943	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	7.15
SRR16705975	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	4.95
SRR16705973	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	4.64
SRR16705970	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	4.22
SRR16705996	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	158.00
SRR16705978	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	130.68
SRR16706004	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	89.22
SRR16705944	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	85.67
SRR16705979	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	63.76
SRR16706005	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	58.41
SRR16705995	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	48.36
SRR16705993	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	46.90
SRR16705947	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	34.43
SRR16705976	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	31.88
SRR16705945	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	27.32
SRR16705994	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	21.27
SRR16705982	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	17.20
SRR16705977	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	12.89
SRR16705948	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	8.54
SRR16705997	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	7.05
SRR16706000	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	29.38
SRR16705963	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	22.57
SRR16705999	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	22.44
SRR16705981	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	20.53
SRR16705961	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	19.98
SRR16705951	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	19.08
SRR16705949	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	18.03
SRR16705983	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	15.01
SRR16706001	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	12.18
SRR16705998	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	11.87
SRR16705980	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	11.84
SRR16705952	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	7.51
SRR16705984	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	5.73
SRR16705962	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	3.48
SRR16705950	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	2.30
SRR16705964	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	1.79
SRR16705987	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	149.97
SRR16705958	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	65.48
SRR16705955	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	47.29
SRR16705967	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	45.02
SRR16705968	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	44.50
SRR16705986	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	40.06
SRR16705966	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	32.63
SRR16706003	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	27.27
SRR16705954	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	26.16
SRR16706002	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	23.84
SRR16705969	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	15.22
SRR16705988	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	12.54
SRR16705959	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	8.51
SRR16705956	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2.99
SRR16705985	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2.68
SRR16705953	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.29
SRR23025711	Polyp	not recorded	not recorded	not recorded	-	7.28
SRR23025710	Polyp	not recorded	not recorded	not recorded	-	6.42
SRR7746668	Polyp	not recorded	not recorded	not recorded	-	5.34
SRR7746667	Polyp	not recorded	not recorded	not recorded	-	5.30
SRR23025713	Polyp	not recorded	not recorded	not recorded	-	4.77
SRR7746666	Polyp	not recorded	not recorded	not recorded	-	4.28
SRR7746669	Polyp	not recorded	not recorded	not recorded	-	3.41
SRR23025708	Polyp	not recorded	not recorded	not recorded	-	2.97
SRR23025712	Polyp	not recorded	not recorded	not recorded	-	1.89
SRR23025709	Polyp	not recorded	not recorded	not recorded	-	1.73

Source: CnidoSite RNA-seq expression matrices (LPERT_TPM, StringTie quantification over 110 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.