Gene detail

Detailed information of OS493_030324-T1 in Lophelia pertusa

Genomic Location: scaffold_194:452912...470276
NR annotation: KAJ7383170.1, hypothetical protein OS493_030324 [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
A1L3F5	C-Maf-inducing protein OS=Xenopus laevis OX=8355 GN=cmip PE=2 SV=2
Q8IY22	C-Maf-inducing protein OS=Homo sapiens OX=9606 GN=CMIP PE=1 SV=3
Q9D486	C-Maf-inducing protein OS=Mus musculus OX=10090 GN=Cmip PE=1 SV=3

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0005302 (this species only)

Pfam domain

No Pfam domain signature was detected for OS493_030324-T1. This gene does have a gene model — the search simply returned no hit.

InterPro

InterPro term	Type	Description	Source
IPR032675 all species →	Homologous_superfamily	Leucine-rich repeat domain superfamily	Interproscan
IPR052813 all species →	Family	C-Maf-inducing protein	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR25480 all species →	LEUCINE-RICH REPEAT-CONTAINING PROTEIN 73	Interproscan

Gene Ontology

No Gene Ontology signature was detected for OS493_030324-T1. This gene does have a gene model — the search simply returned no hit.

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for OS493_030324-T1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of OS493_030324-T1 across 110 RNA-seq samples of Lophelia pertusa. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

110Samples

109TPM > 0

7Conditions

188.2Max TPM

49.0Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
polyp at pH7 9	18	18	31.91	60.69
polyp at pH7 6	18	18	33.36	50.16
coral polyp · control treatment	16	16	55.01	137.05
coral polyp · oil and dispersant treatment	16	16	71.44	146.89
coral polyp · oil treatment	16	16	50.52	72.58
coral polyp · dispersant treatment	16	16	78.45	188.21
Polyp	10	9	13.32	28.32

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR11359510	polyp at pH7 9	not recorded	not recorded	not recorded	-	60.69
SRR11359511	polyp at pH7 9	not recorded	not recorded	not recorded	-	58.24
SRR11359523	polyp at pH7 9	not recorded	not recorded	not recorded	-	48.29
SRR11359522	polyp at pH7 9	not recorded	not recorded	not recorded	-	46.30
SRR11359518	polyp at pH7 9	not recorded	not recorded	not recorded	-	39.89
SRR11359519	polyp at pH7 9	not recorded	not recorded	not recorded	-	37.96
SRR11359495	polyp at pH7 9	not recorded	not recorded	not recorded	-	33.17
SRR11359494	polyp at pH7 9	not recorded	not recorded	not recorded	-	30.71
SRR11359498	polyp at pH7 9	not recorded	not recorded	not recorded	-	28.25
SRR11359499	polyp at pH7 9	not recorded	not recorded	not recorded	-	27.68
SRR11359521	polyp at pH7 9	not recorded	not recorded	not recorded	-	27.56
SRR11359520	polyp at pH7 9	not recorded	not recorded	not recorded	-	24.52
SRR11359496	polyp at pH7 9	not recorded	not recorded	not recorded	-	24.49
SRR11359509	polyp at pH7 9	not recorded	not recorded	not recorded	-	24.07
SRR11359497	polyp at pH7 9	not recorded	not recorded	not recorded	-	22.81
SRR11359508	polyp at pH7 9	not recorded	not recorded	not recorded	-	22.53
SRR11359506	polyp at pH7 9	not recorded	not recorded	not recorded	-	9.01
SRR11359507	polyp at pH7 9	not recorded	not recorded	not recorded	-	8.25
SRR11359515	polyp at pH7 6	not recorded	not recorded	not recorded	-	50.16
SRR11359514	polyp at pH7 6	not recorded	not recorded	not recorded	-	48.32
SRR11359529	polyp at pH7 6	not recorded	not recorded	not recorded	-	43.82
SRR11359526	polyp at pH7 6	not recorded	not recorded	not recorded	-	43.65
SRR11359528	polyp at pH7 6	not recorded	not recorded	not recorded	-	43.63
SRR11359504	polyp at pH7 6	not recorded	not recorded	not recorded	-	43.32
SRR11359500	polyp at pH7 6	not recorded	not recorded	not recorded	-	42.18
SRR11359505	polyp at pH7 6	not recorded	not recorded	not recorded	-	41.64
SRR11359527	polyp at pH7 6	not recorded	not recorded	not recorded	-	40.99
SRR11359501	polyp at pH7 6	not recorded	not recorded	not recorded	-	33.58
SRR11359502	polyp at pH7 6	not recorded	not recorded	not recorded	-	29.65
SRR11359503	polyp at pH7 6	not recorded	not recorded	not recorded	-	28.83
SRR11359513	polyp at pH7 6	not recorded	not recorded	not recorded	-	27.94
SRR11359512	polyp at pH7 6	not recorded	not recorded	not recorded	-	26.99
SRR11359525	polyp at pH7 6	not recorded	not recorded	not recorded	-	16.65
SRR11359517	polyp at pH7 6	not recorded	not recorded	not recorded	-	14.62
SRR11359524	polyp at pH7 6	not recorded	not recorded	not recorded	-	12.32
SRR11359516	polyp at pH7 6	not recorded	not recorded	not recorded	-	12.24
SRR16705990	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	137.05
SRR16705991	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	96.96
SRR16705973	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	63.44
SRR16705965	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	60.59
SRR16705989	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	59.79
SRR16705971	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	55.40
SRR16705972	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	55.03
SRR16705942	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	48.89
SRR16705975	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	47.86
SRR16705943	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	46.40
SRR16705974	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	46.01
SRR16705957	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	35.58
SRR16705960	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	35.15
SRR16705946	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	33.77
SRR16705970	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	29.72
SRR16705992	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	28.57
SRR16705997	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	146.89
SRR16705978	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	109.71
SRR16705993	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	95.16
SRR16705948	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	93.86
SRR16705944	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	90.24
SRR16705976	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	75.38
SRR16705979	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	71.97
SRR16705945	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	68.70
SRR16705995	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	63.69
SRR16706005	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	61.43
SRR16706004	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	56.44
SRR16705947	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	54.98
SRR16705977	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	52.90
SRR16705996	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	48.81
SRR16705982	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	29.36
SRR16705994	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	23.49
SRR16705983	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	72.58
SRR16706001	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	68.25
SRR16705950	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	67.63
SRR16705984	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	67.15
SRR16705999	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	64.28
SRR16705951	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	61.09
SRR16705981	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	59.51
SRR16705952	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	57.73
SRR16705961	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	55.38
SRR16705964	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	43.77
SRR16705949	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	43.52
SRR16705963	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	42.79
SRR16706000	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	42.15
SRR16705980	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	28.43
SRR16705998	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	27.91
SRR16705962	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	6.18
SRR16705987	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	188.21
SRR16705968	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	161.55
SRR16705967	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	134.21
SRR16705955	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	104.69
SRR16705988	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	97.17
SRR16705966	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	95.26
SRR16705954	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	87.04
SRR16705969	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	82.76
SRR16706003	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	62.13
SRR16705986	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	53.20
SRR16705958	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	50.93
SRR16705956	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	47.41
SRR16705959	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	39.55
SRR16706002	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	37.49
SRR16705985	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	10.92
SRR16705953	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2.62
SRR23025711	Polyp	not recorded	not recorded	not recorded	-	28.32
SRR23025709	Polyp	not recorded	not recorded	not recorded	-	23.01
SRR23025713	Polyp	not recorded	not recorded	not recorded	-	17.99
SRR23025710	Polyp	not recorded	not recorded	not recorded	-	16.73
SRR23025708	Polyp	not recorded	not recorded	not recorded	-	12.47
SRR7746668	Polyp	not recorded	not recorded	not recorded	-	11.02
SRR7746666	Polyp	not recorded	not recorded	not recorded	-	10.05
SRR23025712	Polyp	not recorded	not recorded	not recorded	-	9.07
SRR7746667	Polyp	not recorded	not recorded	not recorded	-	4.56
SRR7746669	Polyp	not recorded	not recorded	not recorded	-	0.00

Source: CnidoSite RNA-seq expression matrices (LPERT_TPM, StringTie quantification over 110 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.