Gene detail

Detailed information of OS493_030328-T1 in Lophelia pertusa

Genomic Location: scaffold_194:508113...508973
NR annotation: KAJ7383174.1, hypothetical protein OS493_030328 [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q9XTR8	Lipase ZK262.3 OS=Caenorhabditis elegans OX=6239 GN=txt-8 PE=1 SV=1
Q9HE20	Secreted mono- and diacylglycerol lipase 1 OS=Fusarium solani OX=169388 GN=NHL1 PE=1 SV=1
I1RPD9	Secreted mono- and diacylglycerol lipase 1 OS=Gibberella zeae (strain ATCC MYA-4620 / CBS 123657 / FGSC 9075 / NRRL 31084 / PH-1) OX=229533 GN=FGL1 PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0001286 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF01764 all species →	Lipase_3	Lipase (class 3)	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR029058 all species →	Homologous_superfamily	Alpha/Beta hydrolase fold	Interproscan
IPR002921 all species →	Domain	Fungal lipase-like domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR45908 all species →	PROTEIN CBG11750-RELATED	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0006629 all species →	Biological Process	lipid metabolic process	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for OS493_030328-T1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of OS493_030328-T1 across 110 RNA-seq samples of Lophelia pertusa. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

110Samples

108TPM > 0

7Conditions

6.9Max TPM

2.3Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
polyp at pH7 9	18	18	3.26	5.93
polyp at pH7 6	18	17	3.48	6.85
coral polyp · control treatment	16	16	2.25	4.44
coral polyp · oil and dispersant treatment	16	16	1.81	5.11
coral polyp · oil treatment	16	16	1.96	5.72
coral polyp · dispersant treatment	16	16	1.71	5.96
Polyp	10	9	1.31	3.15

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR11359523	polyp at pH7 9	not recorded	not recorded	not recorded	-	5.93
SRR11359508	polyp at pH7 9	not recorded	not recorded	not recorded	-	5.26
SRR11359509	polyp at pH7 9	not recorded	not recorded	not recorded	-	5.16
SRR11359510	polyp at pH7 9	not recorded	not recorded	not recorded	-	4.84
SRR11359521	polyp at pH7 9	not recorded	not recorded	not recorded	-	4.65
SRR11359522	polyp at pH7 9	not recorded	not recorded	not recorded	-	4.63
SRR11359518	polyp at pH7 9	not recorded	not recorded	not recorded	-	4.11
SRR11359511	polyp at pH7 9	not recorded	not recorded	not recorded	-	4.11
SRR11359519	polyp at pH7 9	not recorded	not recorded	not recorded	-	3.56
SRR11359520	polyp at pH7 9	not recorded	not recorded	not recorded	-	3.39
SRR11359495	polyp at pH7 9	not recorded	not recorded	not recorded	-	3.30
SRR11359494	polyp at pH7 9	not recorded	not recorded	not recorded	-	1.85
SRR11359499	polyp at pH7 9	not recorded	not recorded	not recorded	-	1.69
SRR11359507	polyp at pH7 9	not recorded	not recorded	not recorded	-	1.68
SRR11359498	polyp at pH7 9	not recorded	not recorded	not recorded	-	1.41
SRR11359497	polyp at pH7 9	not recorded	not recorded	not recorded	-	1.26
SRR11359506	polyp at pH7 9	not recorded	not recorded	not recorded	-	1.16
SRR11359496	polyp at pH7 9	not recorded	not recorded	not recorded	-	0.70
SRR11359503	polyp at pH7 6	not recorded	not recorded	not recorded	-	6.85
SRR11359502	polyp at pH7 6	not recorded	not recorded	not recorded	-	6.61
SRR11359501	polyp at pH7 6	not recorded	not recorded	not recorded	-	6.47
SRR11359527	polyp at pH7 6	not recorded	not recorded	not recorded	-	5.78
SRR11359500	polyp at pH7 6	not recorded	not recorded	not recorded	-	5.61
SRR11359526	polyp at pH7 6	not recorded	not recorded	not recorded	-	5.37
SRR11359525	polyp at pH7 6	not recorded	not recorded	not recorded	-	4.01
SRR11359504	polyp at pH7 6	not recorded	not recorded	not recorded	-	3.72
SRR11359528	polyp at pH7 6	not recorded	not recorded	not recorded	-	3.48
SRR11359505	polyp at pH7 6	not recorded	not recorded	not recorded	-	3.44
SRR11359529	polyp at pH7 6	not recorded	not recorded	not recorded	-	2.51
SRR11359517	polyp at pH7 6	not recorded	not recorded	not recorded	-	2.06
SRR11359516	polyp at pH7 6	not recorded	not recorded	not recorded	-	1.86
SRR11359515	polyp at pH7 6	not recorded	not recorded	not recorded	-	1.71
SRR11359514	polyp at pH7 6	not recorded	not recorded	not recorded	-	1.33
SRR11359512	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.99
SRR11359524	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.84
SRR11359513	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR16705974	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	4.44
SRR16705975	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	4.14
SRR16705942	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	4.06
SRR16705971	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	3.71
SRR16705943	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	2.86
SRR16705990	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	2.84
SRR16705957	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	2.25
SRR16705970	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	1.72
SRR16705972	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	1.65
SRR16705991	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	1.53
SRR16705946	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	1.48
SRR16705965	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	1.36
SRR16705960	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	1.36
SRR16705989	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	1.27
SRR16705992	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	0.84
SRR16705973	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	0.43
SRR16705997	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	5.11
SRR16705948	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	4.46
SRR16706004	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	3.21
SRR16705977	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	2.51
SRR16705979	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	1.95
SRR16705978	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	1.68
SRR16705944	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	1.60
SRR16705982	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	1.50
SRR16705976	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	1.35
SRR16705993	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	1.30
SRR16706005	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	0.94
SRR16705945	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	0.93
SRR16705996	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	0.82
SRR16705995	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	0.73
SRR16705947	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	0.62
SRR16705994	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	0.25
SRR16705964	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	5.72
SRR16706001	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	4.07
SRR16705984	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	3.97
SRR16705951	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	2.37
SRR16705998	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	2.36
SRR16706000	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	2.04
SRR16705952	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	1.75
SRR16705981	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	1.75
SRR16705949	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	1.62
SRR16705999	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	1.38
SRR16705962	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	1.12
SRR16705961	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	0.95
SRR16705963	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	0.88
SRR16705983	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	0.63
SRR16705950	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	0.47
SRR16705980	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	0.24
SRR16705986	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	5.96
SRR16705958	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2.91
SRR16705967	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2.45
SRR16705954	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2.21
SRR16705955	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.80
SRR16705988	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.71
SRR16705959	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.67
SRR16705966	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.55
SRR16706003	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.55
SRR16705968	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.27
SRR16706002	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.23
SRR16705985	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.91
SRR16705987	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.78
SRR16705956	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.65
SRR16705969	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.62
SRR16705953	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.08
SRR23025710	Polyp	not recorded	not recorded	not recorded	-	3.15
SRR23025713	Polyp	not recorded	not recorded	not recorded	-	2.61
SRR23025708	Polyp	not recorded	not recorded	not recorded	-	1.80
SRR7746669	Polyp	not recorded	not recorded	not recorded	-	1.55
SRR7746666	Polyp	not recorded	not recorded	not recorded	-	1.37
SRR23025711	Polyp	not recorded	not recorded	not recorded	-	1.04
SRR23025709	Polyp	not recorded	not recorded	not recorded	-	0.79
SRR23025712	Polyp	not recorded	not recorded	not recorded	-	0.77
SRR7746668	Polyp	not recorded	not recorded	not recorded	-	0.06
SRR7746667	Polyp	not recorded	not recorded	not recorded	-	0.00

Source: CnidoSite RNA-seq expression matrices (LPERT_TPM, StringTie quantification over 110 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.