Gene detail

Detailed information of OS493_030330-T1 in Lophelia pertusa

Genomic Location: scaffold_194:515213...515791
NR annotation: KAJ7383175.1, hypothetical protein OS493_030330 [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q9XTR8	Lipase ZK262.3 OS=Caenorhabditis elegans OX=6239 GN=txt-8 PE=1 SV=1
Q9HE20	Secreted mono- and diacylglycerol lipase 1 OS=Fusarium solani OX=169388 GN=NHL1 PE=1 SV=1
I1RPD9	Secreted mono- and diacylglycerol lipase 1 OS=Gibberella zeae (strain ATCC MYA-4620 / CBS 123657 / FGSC 9075 / NRRL 31084 / PH-1) OX=229533 GN=FGL1 PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0001286 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF01764 all species →	Lipase_3	Lipase (class 3)	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR029058 all species →	Homologous_superfamily	Alpha/Beta hydrolase fold	Interproscan
IPR002921 all species →	Domain	Fungal lipase-like domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR45908 all species →	PROTEIN CBG11750-RELATED	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0006629 all species →	Biological Process	lipid metabolic process	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for OS493_030330-T1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of OS493_030330-T1 across 110 RNA-seq samples of Lophelia pertusa. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

110Samples

110TPM > 0

7Conditions

31.1Max TPM

6.7Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
polyp at pH7 9	18	18	7.26	11.95
polyp at pH7 6	18	18	6.32	13.30
coral polyp · control treatment	16	16	8.88	21.68
coral polyp · oil and dispersant treatment	16	16	4.08	8.96
coral polyp · oil treatment	16	16	6.09	12.62
coral polyp · dispersant treatment	16	16	5.11	12.98
Polyp	10	10	10.70	31.10

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR11359523	polyp at pH7 9	not recorded	not recorded	not recorded	-	11.95
SRR11359508	polyp at pH7 9	not recorded	not recorded	not recorded	-	11.28
SRR11359522	polyp at pH7 9	not recorded	not recorded	not recorded	-	10.96
SRR11359509	polyp at pH7 9	not recorded	not recorded	not recorded	-	10.50
SRR11359494	polyp at pH7 9	not recorded	not recorded	not recorded	-	9.89
SRR11359521	polyp at pH7 9	not recorded	not recorded	not recorded	-	9.31
SRR11359518	polyp at pH7 9	not recorded	not recorded	not recorded	-	8.79
SRR11359520	polyp at pH7 9	not recorded	not recorded	not recorded	-	8.23
SRR11359495	polyp at pH7 9	not recorded	not recorded	not recorded	-	7.43
SRR11359519	polyp at pH7 9	not recorded	not recorded	not recorded	-	7.26
SRR11359510	polyp at pH7 9	not recorded	not recorded	not recorded	-	7.04
SRR11359511	polyp at pH7 9	not recorded	not recorded	not recorded	-	6.70
SRR11359499	polyp at pH7 9	not recorded	not recorded	not recorded	-	5.52
SRR11359506	polyp at pH7 9	not recorded	not recorded	not recorded	-	4.57
SRR11359498	polyp at pH7 9	not recorded	not recorded	not recorded	-	3.72
SRR11359497	polyp at pH7 9	not recorded	not recorded	not recorded	-	3.18
SRR11359496	polyp at pH7 9	not recorded	not recorded	not recorded	-	2.28
SRR11359507	polyp at pH7 9	not recorded	not recorded	not recorded	-	2.03
SRR11359527	polyp at pH7 6	not recorded	not recorded	not recorded	-	13.30
SRR11359526	polyp at pH7 6	not recorded	not recorded	not recorded	-	11.93
SRR11359501	polyp at pH7 6	not recorded	not recorded	not recorded	-	11.80
SRR11359502	polyp at pH7 6	not recorded	not recorded	not recorded	-	9.46
SRR11359503	polyp at pH7 6	not recorded	not recorded	not recorded	-	9.07
SRR11359504	polyp at pH7 6	not recorded	not recorded	not recorded	-	8.25
SRR11359529	polyp at pH7 6	not recorded	not recorded	not recorded	-	7.36
SRR11359528	polyp at pH7 6	not recorded	not recorded	not recorded	-	6.91
SRR11359505	polyp at pH7 6	not recorded	not recorded	not recorded	-	6.52
SRR11359514	polyp at pH7 6	not recorded	not recorded	not recorded	-	6.34
SRR11359500	polyp at pH7 6	not recorded	not recorded	not recorded	-	5.28
SRR11359515	polyp at pH7 6	not recorded	not recorded	not recorded	-	4.15
SRR11359524	polyp at pH7 6	not recorded	not recorded	not recorded	-	4.14
SRR11359513	polyp at pH7 6	not recorded	not recorded	not recorded	-	2.96
SRR11359512	polyp at pH7 6	not recorded	not recorded	not recorded	-	2.69
SRR11359525	polyp at pH7 6	not recorded	not recorded	not recorded	-	2.03
SRR11359517	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.83
SRR11359516	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.66
SRR16705942	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	21.68
SRR16705974	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	19.44
SRR16705965	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	15.80
SRR16705971	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	13.95
SRR16705972	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	12.38
SRR16705991	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	10.52
SRR16705970	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	7.99
SRR16705990	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	7.61
SRR16705946	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	6.73
SRR16705957	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	6.07
SRR16705973	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	5.17
SRR16705989	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	4.85
SRR16705960	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	4.36
SRR16705975	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	2.94
SRR16705943	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	2.16
SRR16705992	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	0.48
SRR16706004	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	8.96
SRR16705993	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	8.43
SRR16705995	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	6.71
SRR16705976	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	5.75
SRR16705978	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	5.59
SRR16705977	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	5.45
SRR16705945	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	4.25
SRR16705947	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	4.15
SRR16705944	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	3.30
SRR16705994	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	3.04
SRR16705982	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	2.77
SRR16705996	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	2.71
SRR16705948	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	2.15
SRR16705979	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	1.08
SRR16706005	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	0.66
SRR16705997	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	0.33
SRR16706000	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	12.62
SRR16705951	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	12.56
SRR16705999	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	10.77
SRR16705949	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	10.32
SRR16705961	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	8.20
SRR16705981	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	8.07
SRR16705963	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	7.16
SRR16705983	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	7.11
SRR16705950	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	6.17
SRR16705980	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	5.07
SRR16705998	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	5.02
SRR16706001	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	2.05
SRR16705964	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	0.90
SRR16705952	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	0.51
SRR16705962	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	0.49
SRR16705984	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	0.47
SRR16705955	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	12.98
SRR16705986	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	10.32
SRR16705954	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	9.42
SRR16705958	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	9.14
SRR16705968	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	8.28
SRR16706003	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	6.59
SRR16705967	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	5.26
SRR16705966	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	4.04
SRR16705987	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	3.77
SRR16705985	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	3.42
SRR16706002	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2.30
SRR16705959	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.91
SRR16705956	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.55
SRR16705988	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.02
SRR16705969	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.97
SRR16705953	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.80
SRR23025710	Polyp	not recorded	not recorded	not recorded	-	31.10
SRR7746666	Polyp	not recorded	not recorded	not recorded	-	21.00
SRR7746669	Polyp	not recorded	not recorded	not recorded	-	14.16
SRR23025713	Polyp	not recorded	not recorded	not recorded	-	13.14
SRR23025711	Polyp	not recorded	not recorded	not recorded	-	7.69
SRR23025709	Polyp	not recorded	not recorded	not recorded	-	5.91
SRR23025708	Polyp	not recorded	not recorded	not recorded	-	4.98
SRR7746667	Polyp	not recorded	not recorded	not recorded	-	3.90
SRR7746668	Polyp	not recorded	not recorded	not recorded	-	2.79
SRR23025712	Polyp	not recorded	not recorded	not recorded	-	2.33

Source: CnidoSite RNA-seq expression matrices (LPERT_TPM, StringTie quantification over 110 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.