Gene detail

Detailed information of OS493_030333-T1 in Lophelia pertusa

Genomic Location: scaffold_194:526626...527624
NR annotation: KAJ7383177.1, hypothetical protein OS493_030333 [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q9XTR8	Lipase ZK262.3 OS=Caenorhabditis elegans OX=6239 GN=txt-8 PE=1 SV=1
Q9HE20	Secreted mono- and diacylglycerol lipase 1 OS=Fusarium solani OX=169388 GN=NHL1 PE=1 SV=1
I1RPD9	Secreted mono- and diacylglycerol lipase 1 OS=Gibberella zeae (strain ATCC MYA-4620 / CBS 123657 / FGSC 9075 / NRRL 31084 / PH-1) OX=229533 GN=FGL1 PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0001286 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF01764 all species →	Lipase_3	Lipase (class 3)	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR029058 all species →	Homologous_superfamily	Alpha/Beta hydrolase fold	Interproscan
IPR002921 all species →	Domain	Fungal lipase-like domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR45908 all species →	PROTEIN CBG11750-RELATED	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0006629 all species →	Biological Process	lipid metabolic process	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for OS493_030333-T1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of OS493_030333-T1 across 110 RNA-seq samples of Lophelia pertusa. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

110Samples

110TPM > 0

7Conditions

20.6Max TPM

5.0Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
polyp at pH7 9	18	18	6.84	11.57
polyp at pH7 6	18	18	5.23	11.32
coral polyp · control treatment	16	16	6.97	20.64
coral polyp · oil and dispersant treatment	16	16	2.64	6.84
coral polyp · oil treatment	16	16	4.49	13.35
coral polyp · dispersant treatment	16	16	4.29	14.90
Polyp	10	10	4.00	12.96

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR11359520	polyp at pH7 9	not recorded	not recorded	not recorded	-	11.57
SRR11359522	polyp at pH7 9	not recorded	not recorded	not recorded	-	10.59
SRR11359521	polyp at pH7 9	not recorded	not recorded	not recorded	-	10.43
SRR11359523	polyp at pH7 9	not recorded	not recorded	not recorded	-	9.27
SRR11359508	polyp at pH7 9	not recorded	not recorded	not recorded	-	8.82
SRR11359518	polyp at pH7 9	not recorded	not recorded	not recorded	-	8.21
SRR11359509	polyp at pH7 9	not recorded	not recorded	not recorded	-	7.44
SRR11359496	polyp at pH7 9	not recorded	not recorded	not recorded	-	6.79
SRR11359507	polyp at pH7 9	not recorded	not recorded	not recorded	-	6.12
SRR11359494	polyp at pH7 9	not recorded	not recorded	not recorded	-	5.47
SRR11359499	polyp at pH7 9	not recorded	not recorded	not recorded	-	5.27
SRR11359511	polyp at pH7 9	not recorded	not recorded	not recorded	-	5.21
SRR11359519	polyp at pH7 9	not recorded	not recorded	not recorded	-	5.11
SRR11359497	polyp at pH7 9	not recorded	not recorded	not recorded	-	5.07
SRR11359498	polyp at pH7 9	not recorded	not recorded	not recorded	-	4.89
SRR11359510	polyp at pH7 9	not recorded	not recorded	not recorded	-	4.59
SRR11359495	polyp at pH7 9	not recorded	not recorded	not recorded	-	4.25
SRR11359506	polyp at pH7 9	not recorded	not recorded	not recorded	-	3.99
SRR11359526	polyp at pH7 6	not recorded	not recorded	not recorded	-	11.32
SRR11359527	polyp at pH7 6	not recorded	not recorded	not recorded	-	11.20
SRR11359515	polyp at pH7 6	not recorded	not recorded	not recorded	-	8.42
SRR11359528	polyp at pH7 6	not recorded	not recorded	not recorded	-	8.17
SRR11359529	polyp at pH7 6	not recorded	not recorded	not recorded	-	8.06
SRR11359514	polyp at pH7 6	not recorded	not recorded	not recorded	-	7.86
SRR11359503	polyp at pH7 6	not recorded	not recorded	not recorded	-	6.57
SRR11359502	polyp at pH7 6	not recorded	not recorded	not recorded	-	6.52
SRR11359505	polyp at pH7 6	not recorded	not recorded	not recorded	-	5.69
SRR11359504	polyp at pH7 6	not recorded	not recorded	not recorded	-	4.60
SRR11359512	polyp at pH7 6	not recorded	not recorded	not recorded	-	2.86
SRR11359517	polyp at pH7 6	not recorded	not recorded	not recorded	-	2.83
SRR11359513	polyp at pH7 6	not recorded	not recorded	not recorded	-	2.39
SRR11359501	polyp at pH7 6	not recorded	not recorded	not recorded	-	2.31
SRR11359516	polyp at pH7 6	not recorded	not recorded	not recorded	-	2.14
SRR11359500	polyp at pH7 6	not recorded	not recorded	not recorded	-	2.01
SRR11359524	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.86
SRR11359525	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.36
SRR16705942	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	20.64
SRR16705972	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	14.36
SRR16705974	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	14.17
SRR16705965	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	11.11
SRR16705960	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	9.14
SRR16705991	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	8.45
SRR16705970	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	6.96
SRR16705971	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	6.22
SRR16705946	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	5.23
SRR16705989	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	4.79
SRR16705990	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	3.68
SRR16705943	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	2.19
SRR16705973	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	1.79
SRR16705975	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	1.22
SRR16705957	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	0.86
SRR16705992	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	0.77
SRR16706004	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	6.84
SRR16705976	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	4.87
SRR16705978	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	3.93
SRR16705993	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	3.90
SRR16705947	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	3.40
SRR16705944	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	2.94
SRR16705982	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	2.66
SRR16705996	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	2.25
SRR16705994	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	2.25
SRR16705995	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	1.98
SRR16705948	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	1.53
SRR16705945	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	1.53
SRR16705977	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	1.39
SRR16705979	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	1.19
SRR16705997	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	0.96
SRR16706005	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	0.62
SRR16706000	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	13.35
SRR16705951	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	9.79
SRR16705949	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	8.65
SRR16705963	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	5.73
SRR16705961	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	5.70
SRR16705999	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	5.33
SRR16705950	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	4.68
SRR16705983	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	4.61
SRR16705998	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	3.98
SRR16705980	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	2.76
SRR16706001	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	2.52
SRR16705981	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	1.90
SRR16705962	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	0.85
SRR16705964	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	0.81
SRR16705952	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	0.75
SRR16705984	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	0.39
SRR16705955	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	14.90
SRR16705954	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	7.31
SRR16705968	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	6.26
SRR16705958	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	5.10
SRR16705986	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	4.88
SRR16705967	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	4.08
SRR16706003	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	4.03
SRR16705966	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	3.79
SRR16705956	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	3.72
SRR16705987	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	3.34
SRR16706002	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	3.30
SRR16705985	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2.57
SRR16705969	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.49
SRR16705988	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.48
SRR16705959	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.34
SRR16705953	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.08
SRR7746666	Polyp	not recorded	not recorded	not recorded	-	12.96
SRR23025710	Polyp	not recorded	not recorded	not recorded	-	7.25
SRR7746669	Polyp	not recorded	not recorded	not recorded	-	5.88
SRR23025711	Polyp	not recorded	not recorded	not recorded	-	3.30
SRR7746668	Polyp	not recorded	not recorded	not recorded	-	2.49
SRR23025709	Polyp	not recorded	not recorded	not recorded	-	2.38
SRR23025713	Polyp	not recorded	not recorded	not recorded	-	2.13
SRR7746667	Polyp	not recorded	not recorded	not recorded	-	1.38
SRR23025708	Polyp	not recorded	not recorded	not recorded	-	1.14
SRR23025712	Polyp	not recorded	not recorded	not recorded	-	1.04

Source: CnidoSite RNA-seq expression matrices (LPERT_TPM, StringTie quantification over 110 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.