Gene detail

Detailed information of OS493_030334-T1 in Lophelia pertusa

Genomic Location: scaffold_194:529473...530591
NR annotation: KAJ7383178.1, hypothetical protein OS493_030334 [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q9XTR8	Lipase ZK262.3 OS=Caenorhabditis elegans OX=6239 GN=txt-8 PE=1 SV=1
P47145	Putative lipase LIH1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=LIH1 PE=1 SV=2
I1RCD3	Secreted mono- and diacylglycerol lipase 2 OS=Gibberella zeae (strain ATCC MYA-4620 / CBS 123657 / FGSC 9075 / NRRL 31084 / PH-1) OX=229533 GN=FGL2 PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0001286 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF01764 all species →	Lipase_3	Lipase (class 3)	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR029058 all species →	Homologous_superfamily	Alpha/Beta hydrolase fold	Interproscan
IPR002921 all species →	Domain	Fungal lipase-like domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR45908 all species →	PROTEIN CBG11750-RELATED	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0006629 all species →	Biological Process	lipid metabolic process	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for OS493_030334-T1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of OS493_030334-T1 across 110 RNA-seq samples of Lophelia pertusa. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

110Samples

110TPM > 0

7Conditions

19.2Max TPM

4.7Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
polyp at pH7 9	18	18	6.36	9.96
polyp at pH7 6	18	18	4.52	9.51
coral polyp · control treatment	16	16	6.33	19.17
coral polyp · oil and dispersant treatment	16	16	3.38	7.21
coral polyp · oil treatment	16	16	4.57	13.22
coral polyp · dispersant treatment	16	16	3.04	7.14
Polyp	10	10	4.78	14.08

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR11359520	polyp at pH7 9	not recorded	not recorded	not recorded	-	9.96
SRR11359523	polyp at pH7 9	not recorded	not recorded	not recorded	-	9.94
SRR11359522	polyp at pH7 9	not recorded	not recorded	not recorded	-	9.56
SRR11359521	polyp at pH7 9	not recorded	not recorded	not recorded	-	9.47
SRR11359509	polyp at pH7 9	not recorded	not recorded	not recorded	-	8.97
SRR11359508	polyp at pH7 9	not recorded	not recorded	not recorded	-	7.98
SRR11359494	polyp at pH7 9	not recorded	not recorded	not recorded	-	7.19
SRR11359518	polyp at pH7 9	not recorded	not recorded	not recorded	-	6.49
SRR11359519	polyp at pH7 9	not recorded	not recorded	not recorded	-	5.59
SRR11359496	polyp at pH7 9	not recorded	not recorded	not recorded	-	5.32
SRR11359510	polyp at pH7 9	not recorded	not recorded	not recorded	-	5.22
SRR11359511	polyp at pH7 9	not recorded	not recorded	not recorded	-	5.18
SRR11359497	polyp at pH7 9	not recorded	not recorded	not recorded	-	4.65
SRR11359495	polyp at pH7 9	not recorded	not recorded	not recorded	-	4.57
SRR11359499	polyp at pH7 9	not recorded	not recorded	not recorded	-	4.42
SRR11359507	polyp at pH7 9	not recorded	not recorded	not recorded	-	3.58
SRR11359506	polyp at pH7 9	not recorded	not recorded	not recorded	-	3.26
SRR11359498	polyp at pH7 9	not recorded	not recorded	not recorded	-	3.23
SRR11359526	polyp at pH7 6	not recorded	not recorded	not recorded	-	9.51
SRR11359527	polyp at pH7 6	not recorded	not recorded	not recorded	-	9.08
SRR11359502	polyp at pH7 6	not recorded	not recorded	not recorded	-	7.75
SRR11359514	polyp at pH7 6	not recorded	not recorded	not recorded	-	7.70
SRR11359503	polyp at pH7 6	not recorded	not recorded	not recorded	-	7.61
SRR11359515	polyp at pH7 6	not recorded	not recorded	not recorded	-	6.45
SRR11359529	polyp at pH7 6	not recorded	not recorded	not recorded	-	4.23
SRR11359528	polyp at pH7 6	not recorded	not recorded	not recorded	-	4.17
SRR11359504	polyp at pH7 6	not recorded	not recorded	not recorded	-	4.07
SRR11359517	polyp at pH7 6	not recorded	not recorded	not recorded	-	3.64
SRR11359505	polyp at pH7 6	not recorded	not recorded	not recorded	-	3.57
SRR11359501	polyp at pH7 6	not recorded	not recorded	not recorded	-	3.05
SRR11359516	polyp at pH7 6	not recorded	not recorded	not recorded	-	2.77
SRR11359500	polyp at pH7 6	not recorded	not recorded	not recorded	-	2.74
SRR11359513	polyp at pH7 6	not recorded	not recorded	not recorded	-	2.00
SRR11359525	polyp at pH7 6	not recorded	not recorded	not recorded	-	1.19
SRR11359512	polyp at pH7 6	not recorded	not recorded	not recorded	-	1.07
SRR11359524	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.82
SRR16705965	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	19.17
SRR16705942	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	15.79
SRR16705974	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	12.80
SRR16705971	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	9.33
SRR16705972	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	8.78
SRR16705991	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	8.12
SRR16705990	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	4.34
SRR16705946	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	4.11
SRR16705960	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	3.57
SRR16705970	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	3.33
SRR16705973	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	3.21
SRR16705989	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	2.52
SRR16705975	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	1.90
SRR16705943	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	1.83
SRR16705957	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	1.59
SRR16705992	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	0.97
SRR16705978	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	7.21
SRR16705993	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	6.30
SRR16706004	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	6.08
SRR16705976	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	4.64
SRR16705944	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	3.96
SRR16705947	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	3.74
SRR16705995	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	3.62
SRR16705979	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	3.20
SRR16705996	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	2.48
SRR16705994	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	2.47
SRR16706005	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	2.34
SRR16705977	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	2.01
SRR16705945	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	1.95
SRR16705948	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	1.40
SRR16705997	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	1.34
SRR16705982	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	1.34
SRR16706000	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	13.22
SRR16705951	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	8.84
SRR16705963	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	8.27
SRR16705999	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	7.25
SRR16705949	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	6.92
SRR16705981	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	5.15
SRR16705998	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	3.62
SRR16705961	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	3.36
SRR16705952	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	2.91
SRR16705950	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	2.79
SRR16705983	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	2.62
SRR16705964	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	2.35
SRR16706001	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	1.72
SRR16705980	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	1.59
SRR16705962	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	1.48
SRR16705984	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	0.99
SRR16705955	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	7.14
SRR16705954	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	5.76
SRR16705986	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	5.29
SRR16706003	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	3.53
SRR16705969	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	3.49
SRR16705967	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	3.45
SRR16705966	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2.61
SRR16705987	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2.44
SRR16705958	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2.40
SRR16705956	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2.40
SRR16705988	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2.24
SRR16705959	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2.21
SRR16705968	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.85
SRR16706002	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.84
SRR16705985	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.12
SRR16705953	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.87
SRR7746669	Polyp	not recorded	not recorded	not recorded	-	14.08
SRR7746666	Polyp	not recorded	not recorded	not recorded	-	10.89
SRR23025710	Polyp	not recorded	not recorded	not recorded	-	6.53
SRR7746667	Polyp	not recorded	not recorded	not recorded	-	4.46
SRR23025709	Polyp	not recorded	not recorded	not recorded	-	2.58
SRR23025711	Polyp	not recorded	not recorded	not recorded	-	2.44
SRR7746668	Polyp	not recorded	not recorded	not recorded	-	2.34
SRR23025713	Polyp	not recorded	not recorded	not recorded	-	1.99
SRR23025708	Polyp	not recorded	not recorded	not recorded	-	1.76
SRR23025712	Polyp	not recorded	not recorded	not recorded	-	0.67

Source: CnidoSite RNA-seq expression matrices (LPERT_TPM, StringTie quantification over 110 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.