Gene detail

Detailed information of OS493_030413-T1 in Lophelia pertusa

Genomic Location: scaffold_195:521771...536562
NR annotation: KAJ7377213.1, Succinyl-CoA:3-ketoacid coenzyme A transferase 1, mitochondrial [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
P55809	Succinyl-CoA:3-ketoacid coenzyme A transferase 1, mitochondrial OS=Homo sapiens OX=9606 GN=OXCT1 PE=1 SV=1
Q9D0K2	Succinyl-CoA:3-ketoacid coenzyme A transferase 1, mitochondrial OS=Mus musculus OX=10090 GN=Oxct1 PE=1 SV=1
B2GV06	Succinyl-CoA:3-ketoacid coenzyme A transferase 1, mitochondrial OS=Rattus norvegicus OX=10116 GN=Oxct1 PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0002898 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF01144 all species →	CoA_trans	Coenzyme A transferase	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR004165 all species →	Family	Coenzyme A transferase family I	Interproscan
IPR014388 all species →	Family	3-oxoacid CoA-transferase	Interproscan
IPR012791 all species →	Domain	3-oxoacid CoA-transferase, subunit B	Interproscan
IPR004164 all species →	Active_site	Coenzyme A transferase active site	Interproscan
IPR012792 all species →	Domain	3-oxoacid CoA-transferase, subunit A	Interproscan
IPR037171 all species →	Homologous_superfamily	NagB/RpiA transferase-like	Interproscan
IPR004163 all species →	Binding_site	Coenzyme A transferase binding site	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR13707 all species →	KETOACID-COENZYME A TRANSFERASE	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0008410 all species →	Molecular Function	CoA-transferase activity	Interproscan
GO:0046952 all species →	Biological Process	ketone body catabolic process	Interproscan
GO:0005739 all species →	Cellular Component	mitochondrion	Interproscan
GO:0008260 all species →	Molecular Function	succinyl-CoA:3-oxo-acid CoA-transferase activity	Interproscan
GO:0046950 all species →	Biological Process	obsolete cellular ketone body metabolic process	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K01027	OXCT; 3-oxoacid CoA-transferase	EC:2.8.3.5	Valine, leucine and isoleucine degradation	ko00280	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of OS493_030413-T1 across 110 RNA-seq samples of Lophelia pertusa. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

110Samples

109TPM > 0

7Conditions

52.0Max TPM

14.5Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
polyp at pH7 9	18	18	10.70	14.40
polyp at pH7 6	18	18	9.76	12.61
coral polyp · control treatment	16	16	20.88	52.01
coral polyp · oil and dispersant treatment	16	16	15.37	37.27
coral polyp · oil treatment	16	16	19.55	42.41
coral polyp · dispersant treatment	16	16	15.20	45.21
Polyp	10	9	9.19	17.69

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR11359521	polyp at pH7 9	not recorded	not recorded	not recorded	-	14.40
SRR11359522	polyp at pH7 9	not recorded	not recorded	not recorded	-	13.85
SRR11359520	polyp at pH7 9	not recorded	not recorded	not recorded	-	13.79
SRR11359523	polyp at pH7 9	not recorded	not recorded	not recorded	-	13.00
SRR11359498	polyp at pH7 9	not recorded	not recorded	not recorded	-	12.70
SRR11359499	polyp at pH7 9	not recorded	not recorded	not recorded	-	11.56
SRR11359495	polyp at pH7 9	not recorded	not recorded	not recorded	-	11.44
SRR11359510	polyp at pH7 9	not recorded	not recorded	not recorded	-	11.28
SRR11359519	polyp at pH7 9	not recorded	not recorded	not recorded	-	10.78
SRR11359494	polyp at pH7 9	not recorded	not recorded	not recorded	-	10.74
SRR11359518	polyp at pH7 9	not recorded	not recorded	not recorded	-	10.53
SRR11359508	polyp at pH7 9	not recorded	not recorded	not recorded	-	10.48
SRR11359511	polyp at pH7 9	not recorded	not recorded	not recorded	-	10.20
SRR11359509	polyp at pH7 9	not recorded	not recorded	not recorded	-	8.65
SRR11359496	polyp at pH7 9	not recorded	not recorded	not recorded	-	8.53
SRR11359497	polyp at pH7 9	not recorded	not recorded	not recorded	-	7.60
SRR11359506	polyp at pH7 9	not recorded	not recorded	not recorded	-	7.25
SRR11359507	polyp at pH7 9	not recorded	not recorded	not recorded	-	5.72
SRR11359500	polyp at pH7 6	not recorded	not recorded	not recorded	-	12.61
SRR11359504	polyp at pH7 6	not recorded	not recorded	not recorded	-	12.58
SRR11359505	polyp at pH7 6	not recorded	not recorded	not recorded	-	11.84
SRR11359513	polyp at pH7 6	not recorded	not recorded	not recorded	-	11.66
SRR11359527	polyp at pH7 6	not recorded	not recorded	not recorded	-	11.48
SRR11359514	polyp at pH7 6	not recorded	not recorded	not recorded	-	11.35
SRR11359526	polyp at pH7 6	not recorded	not recorded	not recorded	-	10.80
SRR11359528	polyp at pH7 6	not recorded	not recorded	not recorded	-	10.69
SRR11359503	polyp at pH7 6	not recorded	not recorded	not recorded	-	10.64
SRR11359529	polyp at pH7 6	not recorded	not recorded	not recorded	-	10.55
SRR11359515	polyp at pH7 6	not recorded	not recorded	not recorded	-	10.55
SRR11359502	polyp at pH7 6	not recorded	not recorded	not recorded	-	9.65
SRR11359512	polyp at pH7 6	not recorded	not recorded	not recorded	-	9.53
SRR11359501	polyp at pH7 6	not recorded	not recorded	not recorded	-	9.44
SRR11359516	polyp at pH7 6	not recorded	not recorded	not recorded	-	7.84
SRR11359517	polyp at pH7 6	not recorded	not recorded	not recorded	-	6.73
SRR11359525	polyp at pH7 6	not recorded	not recorded	not recorded	-	4.90
SRR11359524	polyp at pH7 6	not recorded	not recorded	not recorded	-	2.90
SRR16705942	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	52.01
SRR16705946	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	50.87
SRR16705974	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	39.63
SRR16705991	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	39.54
SRR16705972	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	22.59
SRR16705943	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	17.74
SRR16705975	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	16.43
SRR16705970	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	16.05
SRR16705971	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	12.91
SRR16705989	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	12.09
SRR16705965	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	10.80
SRR16705992	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	9.90
SRR16705960	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	9.62
SRR16705990	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	9.47
SRR16705957	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	7.94
SRR16705973	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	6.42
SRR16705996	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	37.27
SRR16706004	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	34.67
SRR16705947	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	29.48
SRR16705978	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	21.54
SRR16705948	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	17.09
SRR16705976	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	15.57
SRR16705979	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	15.09
SRR16705944	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	11.63
SRR16705997	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	11.59
SRR16706005	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	11.45
SRR16705994	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	9.94
SRR16705993	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	9.38
SRR16705995	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	6.80
SRR16705982	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	5.53
SRR16705977	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	5.04
SRR16705945	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	3.87
SRR16706000	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	42.41
SRR16705983	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	39.21
SRR16705951	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	34.99
SRR16705963	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	33.56
SRR16705950	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	19.25
SRR16705961	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	16.88
SRR16706001	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	15.87
SRR16705949	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	15.50
SRR16705952	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	15.30
SRR16705984	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	15.25
SRR16705964	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	14.07
SRR16705998	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	12.96
SRR16705980	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	11.93
SRR16705999	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	10.83
SRR16705981	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	8.26
SRR16705962	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	6.50
SRR16705958	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	45.21
SRR16705959	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	21.12
SRR16705955	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	19.57
SRR16705969	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	16.88
SRR16705968	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	16.31
SRR16705966	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	15.96
SRR16705987	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	15.46
SRR16705956	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	14.80
SRR16705988	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	14.40
SRR16706003	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	12.77
SRR16706002	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	12.02
SRR16705986	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	11.39
SRR16705954	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	9.18
SRR16705967	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	7.72
SRR16705985	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	6.14
SRR16705953	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	4.33
SRR23025709	Polyp	not recorded	not recorded	not recorded	-	17.69
SRR23025711	Polyp	not recorded	not recorded	not recorded	-	15.52
SRR23025708	Polyp	not recorded	not recorded	not recorded	-	15.51
SRR23025710	Polyp	not recorded	not recorded	not recorded	-	13.37
SRR23025713	Polyp	not recorded	not recorded	not recorded	-	10.60
SRR7746666	Polyp	not recorded	not recorded	not recorded	-	6.83
SRR23025712	Polyp	not recorded	not recorded	not recorded	-	5.95
SRR7746668	Polyp	not recorded	not recorded	not recorded	-	3.55
SRR7746667	Polyp	not recorded	not recorded	not recorded	-	2.92
SRR7746669	Polyp	not recorded	not recorded	not recorded	-	0.00

Source: CnidoSite RNA-seq expression matrices (LPERT_TPM, StringTie quantification over 110 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.