Gene detail

Detailed information of OS493_030428-T1 in Lophelia pertusa

Genomic Location: scaffold_195:670563...674270
NR annotation: KAJ7377226.1, hypothetical protein OS493_030428 [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q96DX4	RING finger and SPRY domain-containing protein 1 OS=Homo sapiens OX=9606 GN=RSPRY1 PE=1 SV=1
Q95LP3	RING finger and SPRY domain-containing protein 1 OS=Macaca fascicularis OX=9541 GN=RSPRY1 PE=2 SV=1
Q8BVR6	RING finger and SPRY domain-containing protein 1 OS=Mus musculus OX=10090 GN=Rspry1 PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0003328 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00622 all species →	SPRY	SPRY domain	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR013320 all species →	Homologous_superfamily	Concanavalin A-like lectin/glucanase domain superfamily	Interproscan
IPR045129 all species →	Family	E3 ubiquitin-protein ligase RNF123/RSPRY1-like	Interproscan
IPR003877 all species →	Domain	SPRY domain	Interproscan
IPR043136 all species →	Homologous_superfamily	B30.2/SPRY domain superfamily	Interproscan
IPR001870 all species →	Domain	B30.2/SPRY domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR13363 all species →	RING FINGER AND SRY DOMAIN-CONTAINING	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0004842 all species →	Molecular Function	ubiquitin-protein transferase activity	Interproscan
GO:0005737 all species →	Cellular Component	cytoplasm	Interproscan
GO:0051603 all species →	Biological Process	proteolysis involved in protein catabolic process	Interproscan
GO:0005515 all species →	Molecular Function	protein binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K10457	KLHL20, KLEIP; kelch-like protein 20	-	Ubiquitin system	ko04121	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of OS493_030428-T1 across 110 RNA-seq samples of Lophelia pertusa. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

110Samples

107TPM > 0

7Conditions

23.2Max TPM

4.3Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
polyp at pH7 9	18	18	3.68	5.27
polyp at pH7 6	18	17	3.23	5.59
coral polyp · control treatment	16	16	7.01	23.17
coral polyp · oil and dispersant treatment	16	16	4.88	20.29
coral polyp · oil treatment	16	16	5.67	11.89
coral polyp · dispersant treatment	16	16	2.77	5.94
Polyp	10	8	2.28	5.30

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR11359522	polyp at pH7 9	not recorded	not recorded	not recorded	-	5.27
SRR11359518	polyp at pH7 9	not recorded	not recorded	not recorded	-	4.85
SRR11359523	polyp at pH7 9	not recorded	not recorded	not recorded	-	4.78
SRR11359520	polyp at pH7 9	not recorded	not recorded	not recorded	-	4.57
SRR11359499	polyp at pH7 9	not recorded	not recorded	not recorded	-	4.33
SRR11359494	polyp at pH7 9	not recorded	not recorded	not recorded	-	4.29
SRR11359510	polyp at pH7 9	not recorded	not recorded	not recorded	-	4.17
SRR11359521	polyp at pH7 9	not recorded	not recorded	not recorded	-	4.00
SRR11359519	polyp at pH7 9	not recorded	not recorded	not recorded	-	3.74
SRR11359509	polyp at pH7 9	not recorded	not recorded	not recorded	-	3.60
SRR11359511	polyp at pH7 9	not recorded	not recorded	not recorded	-	3.53
SRR11359497	polyp at pH7 9	not recorded	not recorded	not recorded	-	3.31
SRR11359498	polyp at pH7 9	not recorded	not recorded	not recorded	-	3.09
SRR11359496	polyp at pH7 9	not recorded	not recorded	not recorded	-	2.86
SRR11359508	polyp at pH7 9	not recorded	not recorded	not recorded	-	2.80
SRR11359507	polyp at pH7 9	not recorded	not recorded	not recorded	-	2.80
SRR11359506	polyp at pH7 9	not recorded	not recorded	not recorded	-	2.11
SRR11359495	polyp at pH7 9	not recorded	not recorded	not recorded	-	2.07
SRR11359501	polyp at pH7 6	not recorded	not recorded	not recorded	-	5.59
SRR11359525	polyp at pH7 6	not recorded	not recorded	not recorded	-	4.86
SRR11359504	polyp at pH7 6	not recorded	not recorded	not recorded	-	4.61
SRR11359500	polyp at pH7 6	not recorded	not recorded	not recorded	-	4.21
SRR11359505	polyp at pH7 6	not recorded	not recorded	not recorded	-	4.16
SRR11359526	polyp at pH7 6	not recorded	not recorded	not recorded	-	3.98
SRR11359529	polyp at pH7 6	not recorded	not recorded	not recorded	-	3.47
SRR11359524	polyp at pH7 6	not recorded	not recorded	not recorded	-	3.26
SRR11359514	polyp at pH7 6	not recorded	not recorded	not recorded	-	3.17
SRR11359528	polyp at pH7 6	not recorded	not recorded	not recorded	-	3.12
SRR11359513	polyp at pH7 6	not recorded	not recorded	not recorded	-	3.06
SRR11359527	polyp at pH7 6	not recorded	not recorded	not recorded	-	3.03
SRR11359517	polyp at pH7 6	not recorded	not recorded	not recorded	-	2.77
SRR11359502	polyp at pH7 6	not recorded	not recorded	not recorded	-	2.54
SRR11359515	polyp at pH7 6	not recorded	not recorded	not recorded	-	2.18
SRR11359516	polyp at pH7 6	not recorded	not recorded	not recorded	-	2.14
SRR11359503	polyp at pH7 6	not recorded	not recorded	not recorded	-	1.90
SRR11359512	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR16705973	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	23.17
SRR16705965	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	11.56
SRR16705971	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	11.04
SRR16705972	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	9.87
SRR16705989	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	9.46
SRR16705970	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	7.23
SRR16705990	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	7.08
SRR16705960	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	5.97
SRR16705974	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	5.29
SRR16705946	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	4.81
SRR16705957	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	4.13
SRR16705942	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	4.06
SRR16705975	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	3.05
SRR16705991	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	1.89
SRR16705992	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	1.77
SRR16705943	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	1.76
SRR16705977	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	20.29
SRR16705995	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	7.87
SRR16705945	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	7.40
SRR16705993	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	7.15
SRR16705976	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	6.83
SRR16705994	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	6.15
SRR16705944	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	3.62
SRR16705982	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	3.44
SRR16706004	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	2.75
SRR16705948	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	2.43
SRR16706005	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	2.38
SRR16705997	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	2.32
SRR16705979	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	2.25
SRR16705947	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	1.39
SRR16705996	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	1.36
SRR16705978	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	0.43
SRR16705999	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	11.89
SRR16705950	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	10.30
SRR16705981	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	8.52
SRR16705949	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	8.09
SRR16705980	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	8.04
SRR16705961	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	7.86
SRR16705962	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	5.90
SRR16706001	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	5.31
SRR16706000	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	4.44
SRR16705952	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	4.34
SRR16705998	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	3.89
SRR16705964	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	3.61
SRR16705984	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	3.22
SRR16705951	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	2.20
SRR16705983	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	1.91
SRR16705963	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	1.25
SRR16705959	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	5.94
SRR16705986	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	4.83
SRR16706003	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	4.80
SRR16705958	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	4.03
SRR16705954	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	3.96
SRR16705967	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2.99
SRR16705956	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2.72
SRR16705966	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2.71
SRR16705985	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2.32
SRR16705988	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.98
SRR16705955	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.89
SRR16706002	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.82
SRR16705969	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.48
SRR16705987	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.02
SRR16705953	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.95
SRR16705968	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.94
SRR23025710	Polyp	not recorded	not recorded	not recorded	-	5.30
SRR23025713	Polyp	not recorded	not recorded	not recorded	-	4.19
SRR23025711	Polyp	not recorded	not recorded	not recorded	-	3.68
SRR23025708	Polyp	not recorded	not recorded	not recorded	-	3.31
SRR23025709	Polyp	not recorded	not recorded	not recorded	-	2.45
SRR7746666	Polyp	not recorded	not recorded	not recorded	-	1.66
SRR23025712	Polyp	not recorded	not recorded	not recorded	-	1.36
SRR7746668	Polyp	not recorded	not recorded	not recorded	-	0.88
SRR7746667	Polyp	not recorded	not recorded	not recorded	-	0.00
SRR7746669	Polyp	not recorded	not recorded	not recorded	-	0.00

Source: CnidoSite RNA-seq expression matrices (LPERT_TPM, StringTie quantification over 110 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.