Gene detail

Detailed information of OS493_030440-T1 in Lophelia pertusa

Genomic Location: scaffold_196:99111...103995
NR annotation: KAJ7370688.1, ATP synthase mitochondrial F1 complex assembly factor 2 [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q8N5M1	ATP synthase mitochondrial F1 complex assembly factor 2 OS=Homo sapiens OX=9606 GN=ATPAF2 PE=1 SV=1
Q91YY4	ATP synthase mitochondrial F1 complex assembly factor 2 OS=Mus musculus OX=10090 GN=Atpaf2 PE=1 SV=1
Q1LZ96	ATP synthase mitochondrial F1 complex assembly factor 2 OS=Bos taurus OX=9913 GN=ATPAF2 PE=2 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0007243 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF07542 all species →	ATP12	ATP12 chaperone protein	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR011419 all species →	Family	ATP12, ATP synthase F1-assembly protein	Interproscan
IPR042272 all species →	Homologous_superfamily	ATP12, ATP synthase F1-assembly protein, N-terminal	Interproscan
IPR023335 all species →	Homologous_superfamily	ATP12 orthogonal Bundle domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR21013 all species →	ATP SYNTHASE MITOCHONDRIAL F1 COMPLEX ASSEMBLY FACTOR 2/ATP12 PROTEIN, MITOCHONDRIAL PRECURSOR	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0043461 all species →	Biological Process	proton-transporting ATP synthase complex assembly	Interproscan
GO:0005739 all species →	Cellular Component	mitochondrion	Interproscan
GO:0033615 all species →	Biological Process	mitochondrial proton-transporting ATP synthase complex assembly	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K07556	ATPeAF2, ATPAF2, ATP12; ATP synthase mitochondrial F1 complex assembly factor 2	-	Mitochondrial biogenesis	ko03029	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of OS493_030440-T1 across 110 RNA-seq samples of Lophelia pertusa. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

110Samples

110TPM > 0

7Conditions

37.9Max TPM

9.6Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
polyp at pH7 9	18	18	9.57	16.84
polyp at pH7 6	18	18	10.13	17.34
coral polyp · control treatment	16	16	11.85	29.28
coral polyp · oil and dispersant treatment	16	16	8.33	37.94
coral polyp · oil treatment	16	16	9.20	19.52
coral polyp · dispersant treatment	16	16	6.09	13.90
Polyp	10	10	13.24	19.60

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR11359494	polyp at pH7 9	not recorded	not recorded	not recorded	-	16.84
SRR11359506	polyp at pH7 9	not recorded	not recorded	not recorded	-	14.28
SRR11359522	polyp at pH7 9	not recorded	not recorded	not recorded	-	12.39
SRR11359519	polyp at pH7 9	not recorded	not recorded	not recorded	-	11.36
SRR11359518	polyp at pH7 9	not recorded	not recorded	not recorded	-	10.83
SRR11359495	polyp at pH7 9	not recorded	not recorded	not recorded	-	10.58
SRR11359523	polyp at pH7 9	not recorded	not recorded	not recorded	-	10.17
SRR11359498	polyp at pH7 9	not recorded	not recorded	not recorded	-	9.87
SRR11359509	polyp at pH7 9	not recorded	not recorded	not recorded	-	9.69
SRR11359499	polyp at pH7 9	not recorded	not recorded	not recorded	-	9.60
SRR11359497	polyp at pH7 9	not recorded	not recorded	not recorded	-	8.60
SRR11359496	polyp at pH7 9	not recorded	not recorded	not recorded	-	8.53
SRR11359507	polyp at pH7 9	not recorded	not recorded	not recorded	-	8.25
SRR11359521	polyp at pH7 9	not recorded	not recorded	not recorded	-	7.45
SRR11359508	polyp at pH7 9	not recorded	not recorded	not recorded	-	6.89
SRR11359520	polyp at pH7 9	not recorded	not recorded	not recorded	-	6.65
SRR11359510	polyp at pH7 9	not recorded	not recorded	not recorded	-	5.35
SRR11359511	polyp at pH7 9	not recorded	not recorded	not recorded	-	4.91
SRR11359525	polyp at pH7 6	not recorded	not recorded	not recorded	-	17.34
SRR11359500	polyp at pH7 6	not recorded	not recorded	not recorded	-	14.62
SRR11359528	polyp at pH7 6	not recorded	not recorded	not recorded	-	14.02
SRR11359501	polyp at pH7 6	not recorded	not recorded	not recorded	-	12.03
SRR11359529	polyp at pH7 6	not recorded	not recorded	not recorded	-	11.54
SRR11359512	polyp at pH7 6	not recorded	not recorded	not recorded	-	11.53
SRR11359505	polyp at pH7 6	not recorded	not recorded	not recorded	-	11.28
SRR11359513	polyp at pH7 6	not recorded	not recorded	not recorded	-	11.13
SRR11359504	polyp at pH7 6	not recorded	not recorded	not recorded	-	10.59
SRR11359516	polyp at pH7 6	not recorded	not recorded	not recorded	-	9.49
SRR11359517	polyp at pH7 6	not recorded	not recorded	not recorded	-	8.92
SRR11359514	polyp at pH7 6	not recorded	not recorded	not recorded	-	8.68
SRR11359524	polyp at pH7 6	not recorded	not recorded	not recorded	-	7.91
SRR11359503	polyp at pH7 6	not recorded	not recorded	not recorded	-	7.61
SRR11359527	polyp at pH7 6	not recorded	not recorded	not recorded	-	7.24
SRR11359502	polyp at pH7 6	not recorded	not recorded	not recorded	-	6.62
SRR11359526	polyp at pH7 6	not recorded	not recorded	not recorded	-	5.87
SRR11359515	polyp at pH7 6	not recorded	not recorded	not recorded	-	5.83
SRR16705973	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	29.28
SRR16705974	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	18.59
SRR16705946	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	16.55
SRR16705960	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	15.34
SRR16705942	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	13.93
SRR16705957	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	13.78
SRR16705971	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	13.26
SRR16705965	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	10.62
SRR16705943	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	9.86
SRR16705975	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	9.61
SRR16705972	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	8.66
SRR16705991	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	7.07
SRR16705990	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	6.29
SRR16705970	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	6.13
SRR16705989	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	5.46
SRR16705992	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	5.10
SRR16705977	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	37.94
SRR16706004	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	10.71
SRR16706005	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	10.54
SRR16705993	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	9.99
SRR16705982	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	9.13
SRR16705948	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	7.42
SRR16705947	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	6.44
SRR16705995	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	6.14
SRR16705976	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	6.10
SRR16705945	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	5.63
SRR16705979	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	5.23
SRR16705997	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	5.03
SRR16705978	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	4.07
SRR16705944	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	3.70
SRR16705994	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	2.67
SRR16705996	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	2.53
SRR16706000	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	19.52
SRR16705999	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	15.10
SRR16705998	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	13.90
SRR16705983	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	11.54
SRR16706001	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	10.95
SRR16705950	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	10.73
SRR16705951	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	10.46
SRR16705952	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	9.99
SRR16705984	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	7.30
SRR16705962	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	6.86
SRR16705949	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	6.10
SRR16705964	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	6.05
SRR16705961	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	5.89
SRR16705981	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	5.17
SRR16705963	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	4.74
SRR16705980	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	2.85
SRR16705958	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	13.90
SRR16705959	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	12.41
SRR16706003	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	9.54
SRR16706002	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	7.52
SRR16705954	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	6.84
SRR16705956	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	6.79
SRR16705969	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	6.16
SRR16705988	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	5.92
SRR16705955	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	5.62
SRR16705967	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	4.50
SRR16705986	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	4.49
SRR16705966	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	4.03
SRR16705968	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	3.50
SRR16705985	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	3.13
SRR16705987	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2.13
SRR16705953	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.99
SRR23025710	Polyp	not recorded	not recorded	not recorded	-	19.60
SRR23025713	Polyp	not recorded	not recorded	not recorded	-	19.41
SRR7746667	Polyp	not recorded	not recorded	not recorded	-	17.00
SRR7746666	Polyp	not recorded	not recorded	not recorded	-	13.63
SRR23025709	Polyp	not recorded	not recorded	not recorded	-	13.11
SRR23025708	Polyp	not recorded	not recorded	not recorded	-	12.62
SRR7746668	Polyp	not recorded	not recorded	not recorded	-	11.35
SRR23025712	Polyp	not recorded	not recorded	not recorded	-	10.16
SRR7746669	Polyp	not recorded	not recorded	not recorded	-	9.56
SRR23025711	Polyp	not recorded	not recorded	not recorded	-	5.99

Source: CnidoSite RNA-seq expression matrices (LPERT_TPM, StringTie quantification over 110 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.