Gene detail

Detailed information of OS493_030519-T1 in Lophelia pertusa

Genomic Location: scaffold_197:315205...316745
NR annotation: KAJ7354742.1, Testis-expressed sequence 10 protein [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q9NXF1	Testis-expressed protein 10 OS=Homo sapiens OX=9606 GN=TEX10 PE=1 SV=2
Q5RDK1	Testis-expressed protein 10 OS=Pongo abelii OX=9601 GN=TEX10 PE=2 SV=1
Q3URQ0	Testis-expressed protein 10 OS=Mus musculus OX=10090 GN=Tex10 PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0004262 (this species only) · gene tree & orthology

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF12333 all species →	Ipi1_N	Rix1 complex component involved in 60S ribosome maturation	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR024679 all species →	Domain	Pre-rRNA-processing protein Ipi1, N-terminal	Interproscan
IPR016024 all species →	Homologous_superfamily	Armadillo-type fold	Interproscan
IPR011989 all species →	Homologous_superfamily	Armadillo-like helical	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR16056 all species →	REGULATOR OF MICROTUBULE DYNAMICS PROTEIN	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005634 all species →	Cellular Component	nucleus	Interproscan
GO:0071339 all species →	Cellular Component	MLL1 complex	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for OS493_030519-T1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of OS493_030519-T1 across 110 RNA-seq samples of Lophelia pertusa. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

110Samples

105TPM > 0

7Conditions

4.9Max TPM

1.5Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
polyp at pH7 9	18	17	1.63	3.05
polyp at pH7 6	18	17	2.14	4.92
coral polyp · control treatment	16	16	1.63	4.06
coral polyp · oil and dispersant treatment	16	16	1.01	2.59
coral polyp · oil treatment	16	15	1.19	2.07
coral polyp · dispersant treatment	16	15	1.58	3.68
Polyp	10	9	0.92	2.41

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR11359497	polyp at pH7 9	not recorded	not recorded	not recorded	-	3.05
SRR11359496	polyp at pH7 9	not recorded	not recorded	not recorded	-	2.80
SRR11359495	polyp at pH7 9	not recorded	not recorded	not recorded	-	2.55
SRR11359499	polyp at pH7 9	not recorded	not recorded	not recorded	-	2.39
SRR11359510	polyp at pH7 9	not recorded	not recorded	not recorded	-	2.26
SRR11359498	polyp at pH7 9	not recorded	not recorded	not recorded	-	2.19
SRR11359522	polyp at pH7 9	not recorded	not recorded	not recorded	-	1.76
SRR11359494	polyp at pH7 9	not recorded	not recorded	not recorded	-	1.72
SRR11359511	polyp at pH7 9	not recorded	not recorded	not recorded	-	1.64
SRR11359521	polyp at pH7 9	not recorded	not recorded	not recorded	-	1.64
SRR11359509	polyp at pH7 9	not recorded	not recorded	not recorded	-	1.30
SRR11359506	polyp at pH7 9	not recorded	not recorded	not recorded	-	1.23
SRR11359508	polyp at pH7 9	not recorded	not recorded	not recorded	-	1.21
SRR11359520	polyp at pH7 9	not recorded	not recorded	not recorded	-	1.20
SRR11359518	polyp at pH7 9	not recorded	not recorded	not recorded	-	0.85
SRR11359523	polyp at pH7 9	not recorded	not recorded	not recorded	-	0.78
SRR11359507	polyp at pH7 9	not recorded	not recorded	not recorded	-	0.74
SRR11359519	polyp at pH7 9	not recorded	not recorded	not recorded	-	0.00
SRR11359517	polyp at pH7 6	not recorded	not recorded	not recorded	-	4.92
SRR11359516	polyp at pH7 6	not recorded	not recorded	not recorded	-	3.49
SRR11359515	polyp at pH7 6	not recorded	not recorded	not recorded	-	3.17
SRR11359500	polyp at pH7 6	not recorded	not recorded	not recorded	-	3.05
SRR11359524	polyp at pH7 6	not recorded	not recorded	not recorded	-	3.04
SRR11359514	polyp at pH7 6	not recorded	not recorded	not recorded	-	2.85
SRR11359513	polyp at pH7 6	not recorded	not recorded	not recorded	-	2.78
SRR11359505	polyp at pH7 6	not recorded	not recorded	not recorded	-	2.50
SRR11359501	polyp at pH7 6	not recorded	not recorded	not recorded	-	2.12
SRR11359504	polyp at pH7 6	not recorded	not recorded	not recorded	-	1.77
SRR11359528	polyp at pH7 6	not recorded	not recorded	not recorded	-	1.48
SRR11359502	polyp at pH7 6	not recorded	not recorded	not recorded	-	1.37
SRR11359503	polyp at pH7 6	not recorded	not recorded	not recorded	-	1.31
SRR11359529	polyp at pH7 6	not recorded	not recorded	not recorded	-	1.30
SRR11359526	polyp at pH7 6	not recorded	not recorded	not recorded	-	1.26
SRR11359527	polyp at pH7 6	not recorded	not recorded	not recorded	-	1.05
SRR11359525	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.98
SRR11359512	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR16705946	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	4.06
SRR16705957	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	3.47
SRR16705974	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	3.31
SRR16705942	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	2.66
SRR16705973	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	2.33
SRR16705965	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	2.12
SRR16705975	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	1.49
SRR16705972	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	1.33
SRR16705991	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	1.32
SRR16705943	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	1.28
SRR16705960	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	1.20
SRR16705971	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	0.42
SRR16705989	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	0.36
SRR16705970	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	0.34
SRR16705990	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	0.32
SRR16705992	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	0.12
SRR16706005	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	2.59
SRR16706004	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	1.84
SRR16705948	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	1.84
SRR16705993	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	1.53
SRR16705977	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	1.33
SRR16705997	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	1.27
SRR16705979	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	1.15
SRR16705947	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	0.87
SRR16705996	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	0.67
SRR16705944	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	0.59
SRR16705978	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	0.58
SRR16705995	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	0.51
SRR16705982	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	0.47
SRR16705976	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	0.41
SRR16705945	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	0.37
SRR16705994	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	0.16
SRR16705984	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	2.07
SRR16706000	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	2.03
SRR16705999	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	2.01
SRR16706001	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	2.00
SRR16705980	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	1.51
SRR16705952	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	1.40
SRR16705950	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	1.30
SRR16705964	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	1.29
SRR16705963	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	1.09
SRR16705951	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	1.00
SRR16705998	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	0.99
SRR16705983	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	0.80
SRR16705949	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	0.75
SRR16705961	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	0.63
SRR16705981	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	0.17
SRR16705962	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	0.00
SRR16705958	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	3.68
SRR16705959	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	3.19
SRR16706003	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2.40
SRR16705988	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2.23
SRR16705986	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2.11
SRR16705955	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.76
SRR16705968	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.74
SRR16705956	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.73
SRR16705954	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.59
SRR16705967	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.21
SRR16706002	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.06
SRR16705969	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.88
SRR16705966	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.77
SRR16705985	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.58
SRR16705987	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.37
SRR16705953	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.00
SRR23025710	Polyp	not recorded	not recorded	not recorded	-	2.41
SRR23025713	Polyp	not recorded	not recorded	not recorded	-	1.60
SRR23025709	Polyp	not recorded	not recorded	not recorded	-	1.33
SRR7746666	Polyp	not recorded	not recorded	not recorded	-	0.90
SRR23025711	Polyp	not recorded	not recorded	not recorded	-	0.85
SRR7746668	Polyp	not recorded	not recorded	not recorded	-	0.71
SRR23025708	Polyp	not recorded	not recorded	not recorded	-	0.56
SRR7746667	Polyp	not recorded	not recorded	not recorded	-	0.52
SRR23025712	Polyp	not recorded	not recorded	not recorded	-	0.33
SRR7746669	Polyp	not recorded	not recorded	not recorded	-	0.00

Source: CnidoSite RNA-seq expression matrices (LPERT_TPM, StringTie quantification over 110 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.