Gene detail

Detailed information of OS493_030521-T1 in Lophelia pertusa

Genomic Location: scaffold_197:328833...333607
NR annotation: KAJ7354744.1, hypothetical protein OS493_030521 [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q9Y4A5	Transformation/transcription domain-associated protein OS=Homo sapiens OX=9606 GN=TRRAP PE=1 SV=3
A0A0R4ITC5	Transformation/transcription domain-associated protein OS=Danio rerio OX=7955 GN=trrap PE=3 SV=1
Q8I8U7	Transcription-associated protein 1 OS=Drosophila melanogaster OX=7227 GN=Nipped-A PE=1 SV=4

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0001665 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF20206 all species →	Tra1_ring	Tra1 HEAT repeat ring region	Repeat	Interproscan
PF20175 all species →	Tra1_central	Tra1 HEAT repeat central region	Repeat	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR050517 all species →	Family	DNA Damage Response and Repair Kinase	Interproscan
IPR046805 all species →	Repeat	Tra1, HEAT repeat ring region	Interproscan
IPR016024 all species →	Homologous_superfamily	Armadillo-type fold	Interproscan
IPR046807 all species →	Repeat	Tra1, HEAT repeat central region	Interproscan
IPR011989 all species →	Homologous_superfamily	Armadillo-like helical	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR11139 all species →	ATAXIA TELANGIECTASIA MUTATED ATM -RELATED	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0000124 all species →	Cellular Component	SAGA complex	Interproscan
GO:0005634 all species →	Cellular Component	nucleus	Interproscan
GO:0006281 all species →	Biological Process	DNA repair	Interproscan
GO:0006355 all species →	Biological Process	regulation of DNA-templated transcription	Interproscan
GO:0035267 all species →	Cellular Component	NuA4 histone acetyltransferase complex	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for OS493_030521-T1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of OS493_030521-T1 across 110 RNA-seq samples of Lophelia pertusa. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

110Samples

100TPM > 0

7Conditions

12.4Max TPM

4.1Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
polyp at pH7 9	18	15	4.35	8.75
polyp at pH7 6	18	15	4.09	7.92
coral polyp · control treatment	16	16	5.23	12.43
coral polyp · oil and dispersant treatment	16	16	4.54	7.44
coral polyp · oil treatment	16	15	4.06	8.28
coral polyp · dispersant treatment	16	15	4.13	8.46
Polyp	10	8	0.73	1.91

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR11359522	polyp at pH7 9	not recorded	not recorded	not recorded	-	8.75
SRR11359523	polyp at pH7 9	not recorded	not recorded	not recorded	-	8.00
SRR11359510	polyp at pH7 9	not recorded	not recorded	not recorded	-	7.38
SRR11359511	polyp at pH7 9	not recorded	not recorded	not recorded	-	7.33
SRR11359498	polyp at pH7 9	not recorded	not recorded	not recorded	-	6.06
SRR11359521	polyp at pH7 9	not recorded	not recorded	not recorded	-	5.50
SRR11359499	polyp at pH7 9	not recorded	not recorded	not recorded	-	5.39
SRR11359518	polyp at pH7 9	not recorded	not recorded	not recorded	-	4.91
SRR11359519	polyp at pH7 9	not recorded	not recorded	not recorded	-	4.63
SRR11359496	polyp at pH7 9	not recorded	not recorded	not recorded	-	4.31
SRR11359520	polyp at pH7 9	not recorded	not recorded	not recorded	-	3.95
SRR11359497	polyp at pH7 9	not recorded	not recorded	not recorded	-	3.84
SRR11359508	polyp at pH7 9	not recorded	not recorded	not recorded	-	3.10
SRR11359495	polyp at pH7 9	not recorded	not recorded	not recorded	-	2.77
SRR11359509	polyp at pH7 9	not recorded	not recorded	not recorded	-	2.38
SRR11359494	polyp at pH7 9	not recorded	not recorded	not recorded	-	0.00
SRR11359506	polyp at pH7 9	not recorded	not recorded	not recorded	-	0.00
SRR11359507	polyp at pH7 9	not recorded	not recorded	not recorded	-	0.00
SRR11359505	polyp at pH7 6	not recorded	not recorded	not recorded	-	7.92
SRR11359514	polyp at pH7 6	not recorded	not recorded	not recorded	-	7.40
SRR11359504	polyp at pH7 6	not recorded	not recorded	not recorded	-	7.12
SRR11359529	polyp at pH7 6	not recorded	not recorded	not recorded	-	6.70
SRR11359515	polyp at pH7 6	not recorded	not recorded	not recorded	-	6.69
SRR11359528	polyp at pH7 6	not recorded	not recorded	not recorded	-	5.92
SRR11359526	polyp at pH7 6	not recorded	not recorded	not recorded	-	4.37
SRR11359500	polyp at pH7 6	not recorded	not recorded	not recorded	-	4.30
SRR11359527	polyp at pH7 6	not recorded	not recorded	not recorded	-	4.22
SRR11359516	polyp at pH7 6	not recorded	not recorded	not recorded	-	4.06
SRR11359503	polyp at pH7 6	not recorded	not recorded	not recorded	-	3.81
SRR11359517	polyp at pH7 6	not recorded	not recorded	not recorded	-	3.32
SRR11359502	polyp at pH7 6	not recorded	not recorded	not recorded	-	3.12
SRR11359501	polyp at pH7 6	not recorded	not recorded	not recorded	-	2.46
SRR11359513	polyp at pH7 6	not recorded	not recorded	not recorded	-	2.13
SRR11359512	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR11359524	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR11359525	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR16705973	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	12.43
SRR16705972	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	8.93
SRR16705942	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	7.99
SRR16705990	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	7.31
SRR16705960	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	7.23
SRR16705974	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	5.60
SRR16705965	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	5.47
SRR16705971	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	5.05
SRR16705946	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	4.90
SRR16705975	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	4.67
SRR16705957	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	3.37
SRR16705970	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	3.08
SRR16705991	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	2.45
SRR16705943	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	2.38
SRR16705989	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	1.70
SRR16705992	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	1.14
SRR16705948	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	7.44
SRR16705977	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	7.26
SRR16705995	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	6.97
SRR16705976	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	6.51
SRR16705944	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	5.93
SRR16705997	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	5.24
SRR16705993	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	5.17
SRR16706005	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	4.83
SRR16705978	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	4.22
SRR16705982	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	3.65
SRR16705945	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	3.22
SRR16706004	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	3.04
SRR16705979	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	2.90
SRR16705994	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	2.22
SRR16705996	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	2.14
SRR16705947	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	1.94
SRR16705950	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	8.28
SRR16705952	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	6.23
SRR16705998	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	6.13
SRR16705961	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	5.27
SRR16706001	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	4.94
SRR16705951	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	4.86
SRR16705984	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	4.42
SRR16705981	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	4.25
SRR16706000	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	4.22
SRR16705983	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	3.57
SRR16705980	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	3.53
SRR16705964	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	3.07
SRR16705949	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	2.68
SRR16705999	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	2.14
SRR16705963	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	1.33
SRR16705962	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	0.00
SRR16705958	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	8.46
SRR16705959	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	6.58
SRR16705954	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	5.53
SRR16705988	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	5.29
SRR16705966	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	5.07
SRR16705955	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	4.98
SRR16705968	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	4.72
SRR16706003	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	4.59
SRR16706002	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	4.44
SRR16705956	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	4.06
SRR16705969	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	3.50
SRR16705986	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	3.13
SRR16705967	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2.95
SRR16705987	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.94
SRR16705985	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.88
SRR16705953	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.00
SRR23025709	Polyp	not recorded	not recorded	not recorded	-	1.91
SRR23025711	Polyp	not recorded	not recorded	not recorded	-	1.45
SRR7746666	Polyp	not recorded	not recorded	not recorded	-	1.13
SRR23025713	Polyp	not recorded	not recorded	not recorded	-	0.93
SRR7746668	Polyp	not recorded	not recorded	not recorded	-	0.68
SRR23025710	Polyp	not recorded	not recorded	not recorded	-	0.51
SRR23025708	Polyp	not recorded	not recorded	not recorded	-	0.40
SRR23025712	Polyp	not recorded	not recorded	not recorded	-	0.26
SRR7746667	Polyp	not recorded	not recorded	not recorded	-	0.00
SRR7746669	Polyp	not recorded	not recorded	not recorded	-	0.00

Source: CnidoSite RNA-seq expression matrices (LPERT_TPM, StringTie quantification over 110 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.