Detailed information of OS493_030558-T1 in Lophelia pertusa

Genomic Location: scaffold_198:48052...52830
NR annotation: KAJ7323770.1, hypothetical protein OS493_030558 [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families


 Gene Structure
More details in JBrowse  Sequence
CDS
Transcript
Protein
 UniProt (Swiss-Prot top hit)
UniProt accessionDescription
Q9WTL8Basic helix-loop-helix ARNT-like protein 1 OS=Mus musculus OX=10090 GN=Bmal1 PE=1 SV=2
O88529Basic helix-loop-helix ARNT-like protein 1 OS=Mesocricetus auratus OX=10036 GN=BMAL1 PE=2 SV=1
Q5R4T2Basic helix-loop-helix ARNT-like protein 1 OS=Pongo abelii OX=9601 GN=BMAL1 PE=2 SV=1
 Gene family
Family typeMembership / link
Orthogroup (gene family)OG0001412 (this species only)

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF14598
all species →		PAS_11PAS domainDomainInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR050933
all species →		FamilyCircadian Clock Transcription FactorsInterproscan
IPR000014
all species →		DomainPAS domainInterproscan
IPR001067
all species →		FamilyNuclear translocatorInterproscan
IPR035965
all species →		Homologous_superfamilyPAS domain superfamilyInterproscan
IPR001610
all species →		RepeatPAC motifInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR23042
all species →		CIRCADIAN PROTEIN CLOCK/ARNT/BMAL/PASInterproscan

 Gene Ontology
GO termCategoryDescriptionSource
GO:0000978
all species →		Molecular FunctionRNA polymerase II cis-regulatory region sequence-specific DNA bindingInterproscan
GO:0000981
all species →		Molecular FunctionDNA-binding transcription factor activity, RNA polymerase II-specificInterproscan
GO:0005634
all species →		Cellular ComponentnucleusInterproscan
GO:0006357
all species →		Biological Processregulation of transcription by RNA polymerase IIInterproscan
GO:0034751
all species →		Cellular Componentaryl hydrocarbon receptor complexInterproscan
GO:0003700
all species →		Molecular FunctionDNA-binding transcription factor activityInterproscan
GO:0005667
all species →		Cellular Componenttranscription regulator complexInterproscan
GO:0005737
all species →		Cellular ComponentcytoplasmInterproscan
GO:0006355
all species →		Biological Processregulation of DNA-templated transcriptionInterproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.
 KEGG pathway
No KEGG orthology assignment for OS493_030558-T1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.
Expression pattern
 Expression trend for OS493_030558-T1 global co-expression network
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