Gene detail

Detailed information of OS493_030561-T1 in Lophelia pertusa

Genomic Location: scaffold_198:93807...103190
NR annotation: KAJ7323773.1, hypothetical protein OS493_030561 [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
P35790	Choline kinase alpha OS=Homo sapiens OX=9606 GN=CHKA PE=1 SV=3
O54804	Choline kinase alpha OS=Mus musculus OX=10090 GN=Chka PE=1 SV=3
Q01134	Choline kinase alpha OS=Rattus norvegicus OX=10116 GN=Chka PE=1 SV=2

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0004454 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF01633 all species →	Choline_kinase	Choline/ethanolamine kinase	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR011009 all species →	Homologous_superfamily	Protein kinase-like domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR22603 all species →	CHOLINE/ETHANOALAMINE KINASE	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0004103 all species →	Molecular Function	choline kinase activity	Interproscan
GO:0004305 all species →	Molecular Function	ethanolamine kinase activity	Interproscan
GO:0005737 all species →	Cellular Component	cytoplasm	Interproscan
GO:0006646 all species →	Biological Process	phosphatidylethanolamine biosynthetic process	Interproscan
GO:0006656 all species →	Biological Process	phosphatidylcholine biosynthetic process	Interproscan
GO:0006657 all species →	Biological Process	CDP-choline pathway	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K14156	CHK; choline/ethanolamine kinase	EC:2.7.1.32 EC:2.7.1.82	Choline metabolism in cancer	ko05231	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of OS493_030561-T1 across 110 RNA-seq samples of Lophelia pertusa. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

110Samples

110TPM > 0

7Conditions

43.7Max TPM

14.3Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
polyp at pH7 9	18	18	12.60	18.15
polyp at pH7 6	18	18	14.68	22.96
coral polyp · control treatment	16	16	14.64	43.67
coral polyp · oil and dispersant treatment	16	16	18.06	33.13
coral polyp · oil treatment	16	16	13.67	19.73
coral polyp · dispersant treatment	16	16	15.83	33.02
Polyp	10	10	9.16	17.35

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR11359496	polyp at pH7 9	not recorded	not recorded	not recorded	-	18.15
SRR11359521	polyp at pH7 9	not recorded	not recorded	not recorded	-	17.33
SRR11359497	polyp at pH7 9	not recorded	not recorded	not recorded	-	15.69
SRR11359519	polyp at pH7 9	not recorded	not recorded	not recorded	-	15.37
SRR11359522	polyp at pH7 9	not recorded	not recorded	not recorded	-	13.55
SRR11359510	polyp at pH7 9	not recorded	not recorded	not recorded	-	13.39
SRR11359523	polyp at pH7 9	not recorded	not recorded	not recorded	-	13.19
SRR11359495	polyp at pH7 9	not recorded	not recorded	not recorded	-	13.11
SRR11359520	polyp at pH7 9	not recorded	not recorded	not recorded	-	12.94
SRR11359507	polyp at pH7 9	not recorded	not recorded	not recorded	-	12.39
SRR11359499	polyp at pH7 9	not recorded	not recorded	not recorded	-	12.05
SRR11359518	polyp at pH7 9	not recorded	not recorded	not recorded	-	11.53
SRR11359498	polyp at pH7 9	not recorded	not recorded	not recorded	-	11.13
SRR11359511	polyp at pH7 9	not recorded	not recorded	not recorded	-	10.61
SRR11359506	polyp at pH7 9	not recorded	not recorded	not recorded	-	10.53
SRR11359494	polyp at pH7 9	not recorded	not recorded	not recorded	-	9.55
SRR11359508	polyp at pH7 9	not recorded	not recorded	not recorded	-	8.24
SRR11359509	polyp at pH7 9	not recorded	not recorded	not recorded	-	8.02
SRR11359500	polyp at pH7 6	not recorded	not recorded	not recorded	-	22.96
SRR11359513	polyp at pH7 6	not recorded	not recorded	not recorded	-	22.60
SRR11359512	polyp at pH7 6	not recorded	not recorded	not recorded	-	20.44
SRR11359501	polyp at pH7 6	not recorded	not recorded	not recorded	-	19.26
SRR11359515	polyp at pH7 6	not recorded	not recorded	not recorded	-	18.79
SRR11359514	polyp at pH7 6	not recorded	not recorded	not recorded	-	18.21
SRR11359528	polyp at pH7 6	not recorded	not recorded	not recorded	-	14.62
SRR11359529	polyp at pH7 6	not recorded	not recorded	not recorded	-	14.01
SRR11359527	polyp at pH7 6	not recorded	not recorded	not recorded	-	12.95
SRR11359517	polyp at pH7 6	not recorded	not recorded	not recorded	-	12.89
SRR11359526	polyp at pH7 6	not recorded	not recorded	not recorded	-	12.65
SRR11359502	polyp at pH7 6	not recorded	not recorded	not recorded	-	12.29
SRR11359516	polyp at pH7 6	not recorded	not recorded	not recorded	-	11.84
SRR11359504	polyp at pH7 6	not recorded	not recorded	not recorded	-	11.44
SRR11359525	polyp at pH7 6	not recorded	not recorded	not recorded	-	10.98
SRR11359503	polyp at pH7 6	not recorded	not recorded	not recorded	-	10.88
SRR11359505	polyp at pH7 6	not recorded	not recorded	not recorded	-	10.48
SRR11359524	polyp at pH7 6	not recorded	not recorded	not recorded	-	6.96
SRR16705973	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	43.67
SRR16705974	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	18.80
SRR16705943	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	17.26
SRR16705990	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	15.50
SRR16705965	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	14.55
SRR16705942	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	14.13
SRR16705975	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	12.96
SRR16705960	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	12.49
SRR16705972	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	12.08
SRR16705992	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	11.96
SRR16705957	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	11.87
SRR16705971	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	11.11
SRR16705946	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	10.62
SRR16705991	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	10.00
SRR16705970	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	9.67
SRR16705989	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	7.55
SRR16705977	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	33.13
SRR16705979	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	27.01
SRR16705978	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	20.53
SRR16705995	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	19.84
SRR16705948	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	19.57
SRR16705947	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	19.15
SRR16706004	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	18.61
SRR16705993	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	18.55
SRR16705945	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	17.47
SRR16706005	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	16.64
SRR16705997	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	16.44
SRR16705996	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	15.04
SRR16705976	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	13.60
SRR16705944	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	13.57
SRR16705982	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	12.57
SRR16705994	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	7.27
SRR16705984	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	19.73
SRR16705951	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	18.52
SRR16705983	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	18.38
SRR16705981	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	18.02
SRR16705950	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	15.18
SRR16705952	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	14.08
SRR16706001	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	14.07
SRR16705961	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	14.06
SRR16705963	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	13.41
SRR16705949	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	12.47
SRR16705998	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	12.28
SRR16705999	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	12.22
SRR16706000	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	11.21
SRR16705964	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	9.93
SRR16705980	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	8.25
SRR16705962	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	6.91
SRR16705987	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	33.02
SRR16706003	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	30.61
SRR16705968	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	22.05
SRR16706002	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	21.09
SRR16705969	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	19.57
SRR16705959	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	17.77
SRR16705956	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	16.19
SRR16705988	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	14.88
SRR16705967	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	13.08
SRR16705954	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	12.86
SRR16705958	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	12.75
SRR16705955	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	11.88
SRR16705966	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	11.65
SRR16705986	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	10.49
SRR16705985	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	4.37
SRR16705953	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.99
SRR7746669	Polyp	not recorded	not recorded	not recorded	-	17.35
SRR23025709	Polyp	not recorded	not recorded	not recorded	-	12.22
SRR23025710	Polyp	not recorded	not recorded	not recorded	-	12.08
SRR23025708	Polyp	not recorded	not recorded	not recorded	-	10.48
SRR23025711	Polyp	not recorded	not recorded	not recorded	-	9.09
SRR23025713	Polyp	not recorded	not recorded	not recorded	-	7.85
SRR7746666	Polyp	not recorded	not recorded	not recorded	-	7.07
SRR23025712	Polyp	not recorded	not recorded	not recorded	-	6.93
SRR7746668	Polyp	not recorded	not recorded	not recorded	-	4.62
SRR7746667	Polyp	not recorded	not recorded	not recorded	-	3.91

Source: CnidoSite RNA-seq expression matrices (LPERT_TPM, StringTie quantification over 110 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.