Gene detail

Detailed information of OS493_030563-T1 in Lophelia pertusa

Genomic Location: scaffold_198:114089...123977
NR annotation: KAJ7323775.1, Transcription intermediary factor 1-alpha [Desmophyllum pertusum]
Species abbreviation LPERT · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

OS493_030563-T1

ATGAGCGAAGGAGGTGCTTCTGGCAGTGCAGAAGATCTGGAGGAAGAATCCGTGTTCATGTTGTGCGGGCTGTGTAAAAAGCCGCCGGTGGACACAAGTCCGAAGCTTCTGCCTTGCCTTCACTCGTTTTGTTTGAATTGTTTGGAAGAGCGTTTTGCCGAACAGCAACAAGAAAAGGTCCCTTCGACAACTGCCAGTGCTTCGTCGAACTCAATTCCAAGGCTAAAATGTCCGAATTGTGGTCAAGAGTTTTTAGTTCCTCCAAAGGGAGTGATAGGTTTCCTGGATAATCAATTCGTGTTAGAAAACCTGGGAAAAATGCAAAGAAAACAAGAAAACGTACTGCGGTTTTGTACTTCTTGCGAAGACAACAGTCCAGCTTCGTCGTTCTGTTTGAACTGTAGCGACTGGCTTTGCGATGCTTGTGTTTCTGCCCATCAGCGAGTGAGAGTAACGAAGGATCACAAGATTCAATCAGAGGCGGAGTATTTAGAAAACTCTGAATCGGCGGACGTGAAACCCATTTTCTGCAGCACTCATACACATGAATCCTTAAAACTGTTCTGTGCGAACTGCGAGAAATTGACTTGTCGGGATTGTCAACTTCTTGAACATAAAGATCATAAATACCAGTTTATTAAGGAAGCCGCAATCAGTTACAAAGATTACCTCAGAGGACAGCTGAATCGATTGTACGAGCAAGCACAGCCTTTGACTGATTCGATCCGAGAAGTGGAGAAAGCAGCCAAAGGTTTACAAGAACGGGAAGAAAATATTGCATCTGAGATAAGAAAATCTTCAGAGATGCTTGTTAAGGCCGTAAAACAGAGGGAAAATGTGTTGTTGACAGAGTTGAAAGCTCTTGTACACTTCAAACACAAGCTCTTGTCAAAACAGAATAAGGACCTAAGGCTGATGCAAAAGATTCTCCAACACAATTATGGCTTTACCAGGCATGTACTAAAGAATGGTAGTGACATGGGATTGTTGTACAGCAAGAGGCAGCTTAGCTCAAGAATTCAAAATTTATTAAGTCTCAAGTATAATGTCCTTCCAGTAGCTCACAGTGATTTGAAATTTTCTGTTGAGACAGAAAAACTCTGTTCTGTCATCTCTAAACTCGGAAGTGTCATAACTCCAGCTGACAGAAATAATACCAATTCCAGCCGGCCAGATGCATCCTTTCGCGGTTTATCCAATGCTAGTAGCTACGCGGCACTACCCAACAGTACTATCTCCGCTGCAGTGCCAAACCGTCCAGTCAGTTCAAGTACGCCCATGCGACCCAACCCCATCGAAGCTCTTTCTGCTGTCAACAAGCGCTTAGGTCCACCAAGCAGCCAGTCTTATTCCAAATATCCTTCGCTTCAGGCGGCAATTGTTCATCCGTCTGGTGCTAGTGTAACCGTACACAGTAAAGTTGGTATTGTGTCGGCAAACAGTGTGTCTCGATTACCACTAACATCAGGTGTGCGATTGATTAAACCAGGAAGTAACATTTCCAACAACAGTTTTTACATTTGGACAGAGAAATCCAAACACATTGGAAGCAGAATTAATATTGGCAAGTCACCACCACCAAGACCAGCAAGCAATGGTAGCAATCACAGTCAACAGAGCACGTCGCCGCAAAGTGATTCATCTGGATCTTTGCCTAAGCAAAATGGCTGGGAAGACCAAAGTGCTGCGTCTGACTCGCCTAGTCAAGTTTTGAAAGGTGCAACTTCACCTACACATACTAGCAGCGTTGGCGACTCTGTGGTGGTCCCCACAGTGCCTAAACTACTTCCCATATTAAAGAGAAGTCACAGTTCCCAGGGATTATCAGACCCTGTGGTACCTCCCCCAGTGCCCAAACTTCTCCCTGTGCTAAAGAGGAGTAACAGTTCCCAGGGAATCCCTGACCCTGTGGTATCCCCGGTAGCATGCTCACCACCACCAGTCAAGGTCAAGCTAGAAAAACCAGAATCTCCCATGGAGTTCTCCCCTTGTCATGAATCCCCGAAGAAGCAACAAGAAGATGCTACCAGTGGGGAGAGTGGAATTGATGAGACTGGTACAAATGACGACTGGTGTGCTGTGTGCCGTAACGGTGGAGAACTACTTTGCTGCGACACTTGTCCACGAGTGTTTCACCTACAGTGTCATGTGCCCTGCCTTCCCACCACTCCAAGTGACTCGTGGAGCTGTGGTTTATGTCAGCCAGTTGACTGGAATGCATTAAAACAGAAAGACAAGGAAGCCTTCCTTCCAGGCAATAAAAGACGATCTTCATACAATGGTCTGACAGAGTATGAGAGAAAGGTTTCTGAAAAGATTCTACTTGAGCTGTTTTGTCACTCAGACAGTATTCCATTTCAACAGAAAGTCAGCAAATCGGTTCCTAATTACTACAAAGTCATCTCACATCCCATGGATATGTCAAATGTTCGTGCCAAGCTACAAACACAGAACTTTGCACACTATCAAACCTTCAATGAATTTGTTGGTGACTGTCGCCTGATCTTTGAAAACTGTGCAATATTTAATGAAGCGAGCTCTGAAGTTGGAAAAATGGGGTGCAACGTAGAAGTGTATTTTGACACTGTGCTGAAAAATTACATGCCTGATTTTGTTGAACCAACTGGAGAACCAAAACCAAAGAGGAAAAAAGATGATGCAAAGATGTTTATACTGAATCCGTAA

Transcript

OS493_030563-T1

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q64127	Transcription intermediary factor 1-alpha OS=Mus musculus OX=10090 GN=Trim24 PE=1 SV=1
Q6E2N3	E3 ubiquitin-protein ligase TRIM33 OS=Danio rerio OX=7955 GN=trim33 PE=2 SV=1
O15164	Transcription intermediary factor 1-alpha OS=Homo sapiens OX=9606 GN=TRIM24 PE=1 SV=3

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0005605 (this species only)
Ubiquitin family	E3\|E3 activity RING\|PHD · all ubiquitin genes in this species

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00439 all species →	Bromodomain	Bromodomain	Domain	Interproscan
PF00643 all species →	zf-B_box	B-box zinc finger	Domain	Interproscan
PF00628 all species →	PHD	PHD-finger	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001487 all species →	Domain	Bromodomain	Interproscan
IPR036427 all species →	Homologous_superfamily	Bromodomain-like superfamily	Interproscan
IPR001841 all species →	Domain	Zinc finger, RING-type	Interproscan
IPR019786 all species →	Conserved_site	Zinc finger, PHD-type, conserved site	Interproscan
IPR011011 all species →	Homologous_superfamily	Zinc finger, FYVE/PHD-type	Interproscan
IPR003649 all species →	Domain	B-box, C-terminal	Interproscan
IPR000315 all species →	Domain	B-box-type zinc finger	Interproscan
IPR017907 all species →	Conserved_site	Zinc finger, RING-type, conserved site	Interproscan
IPR019787 all species →	Domain	Zinc finger, PHD-finger	Interproscan
IPR013083 all species →	Homologous_superfamily	Zinc finger, RING/FYVE/PHD-type	Interproscan
IPR001965 all species →	Domain	Zinc finger, PHD-type	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR45915 all species →	TRANSCRIPTION INTERMEDIARY FACTOR	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005515 all species →	Molecular Function	protein binding	Interproscan
GO:0008270 all species →	Molecular Function	zinc ion binding	Interproscan
GO:0000790 all species →	Cellular Component	chromatin	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for OS493_030563-T1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern

Expression trend for OS493_030563-T1 global co-expression network