Gene detail

Detailed information of OS493_030611-T1 in Lophelia pertusa

Genomic Location: scaffold_199:446460...566192
NR annotation: KAJ7389563.1, hypothetical protein OS493_030611 [Desmophyllum pertusum]
Species abbreviation LPERT · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

OS493_030611-T1

ATGGCCACTGCAAATGTCAACATATGGATTCTTTGCATCTTGGTTGTTTCCTATGTACATACAAGTGATGGCAATTACCCAGAGTTAGTAAAAGTCAATGATGTGCTGGTTAACTTGGCATATGATAATGTCACAAAGAACATTTTTATTGGAGGTGAAAATGTGCTGTTCAAGGCATCAGAAACTTTAAAAGAGCTTAAGAAAAACATAACTGGACCCAAGTTGGATTATATCAATTGTCTTATTGACGAAGAATGCACTGGCAAAATCACAAATAACAGAAACAAAGTATTGCTGATAGACAAGACAAAAAGACGTCTTGTAACGTGTGGAAGCCTCAAGCATGGAGTCTGTCAGCTTAGAAGTCTAGACACATTAGAAATACAAACAAACAGCAATAAATTTATTGTGTCAAATGCTCTGTTACCAGCAGTGGCATTGATAACGCCATGGGGGGATACTCCAGGAACACGTGCCATGTATGTTGCAACTTCATGGGATGGAAAATATCAGTCCTCAGATTTAAATTTTGGAACCAGACCTGCTGTATCTACTCGTCTTATTGATGGCCCTGATATCTTTGATCTTGCTGAGGATAAATTTAAGCAGAGCTATTTGCAGTTTGATAAATTTGATTATGAAGCAAGGTATATTTATGGATTTTCATCTGGTGGTTTCAGCTATTTTGTTTCTGTGCAACAGACAACTAAATCATACCAAGAAAAAACCAAACTGTTCAAGACATTTATAATTCGTCTTTGCCAAGAGGATACAACCTATTTGTCATACATTGAGTTACCACTGGAATGCCGAGGGTCCAATGGAACAAACTTCAACATAGCACAGTCAGCTTATCTTACAAAAGCTGGAGATGGCTTTGGGATTCTTGCATCTGATGATGTACTGGTTATTTCATTTTTTGAGTCTACTAAAGGTTGGGATGGATTTTCCCAAAAATCTGCCATATGTATGTATCCAGTCAAAGACATCAATGCAGATATGGCGTATAACCTCGAGAATTGTGTTAGAACAGGCACTCCTGGCGAGACATTTGGCCTTCCATGGGTATTCAAGGGCAACGAGAAATGTTCTGATCAGACTAGTACACCAACAATCACAGATGATTACTGTCCAAGATCATCGGGTAGCTTTCATCCATTTCGTGGCAAAAGTCCCTTATCTAAACAAGCTGTGATGCAATATGACAAGGGAAAGCTTAGTGCTGTTGCAGCAATGCCATATCATAATCATACAGTGATGTTTGTTGGTACTGATCATGGTCAATTATTTAAGGTGTCAATTCAAGATAGTCAAGAGCAAGTGGAACCTTACAGTGAGCTGGGTATTGGCTCTGATGAGGTGCTCCAAATTATCCTTACCAATGACCAGAAACACTTGTATGTCCTGAGTACACACAAGGTGACCAGAGTACCAGTTGAAGAATGCAGCTCGTTTTCGTCTTGTAATGAGTGTGTTAAACCTAAGGATCCTTTCTGTGGCTGGTGCACATTGTATAACAGCTGTTCTCAAAAGAAATTCTGCCCTAAGGCTGACGCACATCCCTTGCGATATGTGACAAATGTTTCTAATTGTGTGGAGTTTGCTTCTATCAAACCTGAACAAGTCCCTCTTGGCCCAAGTATTGAAGTATGGATCATTCTGAAAATAGTTGTCTCCAATCTACCACCTTCGACAGGGCTGAAGTGCTTCATTCATAGAAAAGAAAGACAAATAACTGTACTTTCAGGAAATGAAGTTAAATGTAAGACACCCCCAAAGGAAGAACTGCCAAGTATTTCAAGTGACACGGGTGATGTTTTTGTTGATCTTGCCCTGTTCTCTACAGAGTCCCAGAAAATATTTCTTACCAAGAAACTAGGATTTTATGACTGTTCTGCCATTAAGGGTTGCAGAAACTGTGCAGAAAGGAATTACCAGTGTAATTGGTGCACATATCTTGGGAAATGCACTAGTGATGGAAATGCTGACTGCCCAGGACAGTTTATAATGCCTAAACTGGAGCATATTGCTGGTTCAAAAGGTTGCCCTGGGTTACAAGCTGACAAGACATTGCTTGTTCCAGCACAAATCAGTACTAACATTACTGTCCCTGCTCATGATCTTCCTGAGATAAAGCCTGGTGCCTCGTATAAGTGCATATTAACAGTTGATGGAATTGATAAAGAAACAGATGCAACACGAATCAGTGACACACAGTTGATGTGCTCTCCTATGGAATATTCCTACAGTGCATCTGTCAAGAGACATGCTGTGAAGTTAGCTGTTACATTCAGGAATGCAGACCTGTATACACCCAGTACTTTGAAAGTATATCTGTACAAGTGTTGGATATCCAGGACAGACTGTAGTAGCTGTCATATTGATGTAGAAGCTGATCCTAATCTTAAGTGTGGCTGGTGCAAGGCTGGAAAAGCAAAGTGCTTAGTTCGAGAAGCATGCAGTTCTTTAAGGGCCTGGATTCCGTACACATCACTATGCCTTACTACACCTATGATAACCAAGGTATGGCCAATAGCTGGTCCAGTGACTGGGGGAACAGAGATAGAAATCCATGGATCTGATCTAGGGAAAAGCTTTGATGATATTAGGGACTCTGTTCTTGTGTCAGGCTTTAGATGTCATCCCAATGAAAGGAAATATCATCCTTCTAGAAGAATCTTCTGTAATACATCAAGTAGTGGTCTCCCTCAGAATGGCAGAGTTACTGTGACAGTCAGTAAAATCAAAGGAGAATCAAAGCAGCTGTTTTATTACCAGAACCCAGAGCCACAGGATTTCTATCCCAAGAAAGGCCCCAGATCTGGAGGAACATTAGTAACTATCACAGGTCTTAAAATGGACACTGGAAGATACATTACAGCTCAAGTTGCTGGCCGAAGATGTCGTGTTGACAGGAATATGGTGACAAATAGCAGTGTACCATGTGTGATCAGCCCTGTTTTTGGAAGGAGAAGAAGAATGGTAAATGCAAGTGCAGCTGGTGTCACTATAGCATTTGATGGTTTTACTCCAACTGCTCCCAGGGGAATTTTCATATTTACTCCTGATCCTACAGTCACTTCTATTAAGCCAGATGAAGTATTTTTAGGAGGAGGCCTTCAGCTGCAAATTACTGGCACCAATTTTGATGCTATCCAGAAACCCCAAATGTACTTCATATACCCTTCACAAAATGGTACTGCTACTACTGATGTTGTGGAATGCACACCCGTCAGCAGCACACTGATGACATGTAAGAGTCCAAAAGTAACAGGCCTTTTGGGAAATGTGTCAGAGGTGCAGGCTCAATTCATCATGGATGGTGATGTAAAGTTGCTGTCAAATTTCACCAAGTTAACAATGATGCCTGATCCATTTTTTGAGCGTTTTAAAGATGATATTCATGTGCTCAAGACAGAGAGCCTTATCCTAGAGGGTAGGAACTTACAAGACACACTCAGAGAGCACATTTTAGTGACAGTTGGAGGTTTACCTTGCAAAATAACCAGTATTGACAAGACCCAAGTAGTTTGCATTGCACCTACCGAGGATAGCCAATCTCCAAAGTCATCTGATGATCTGTACCCTGTTAAGGTTGTTGTGGGAAACTTAAAGTTCCTTCTTGGTAACCTTAAGTATTTCAAAGAGGCGACAAGCCAGGTTATTCCAATTGAAGTTTGGATTGGAGTGGGCATTGGTGTTGCTGTAATTATCATCATTGTCATCATCATACTTTGCTTCTGTCGGCGTAGTCGCCGTAAACAGAAGAAAAATTTTAAGAGCCTTGAGGTACAGATGAACAACTTGGAGTCCAAAGTTGCTCGTGAATGCAGAGAAGCTTTTGCGGAACTTCAGACAGATGTGACAGATTTAACAAGTGACCTTACCACTTCTGGAATGCCATTTTTAGATTTCCAAATGTATGCTTTGCATGTGCTGTTTCCTGGATTAGATGATCATGCAGTGCTGCACAAGACTAAGGGTACACTCAAAGAAAACTGGGAGAAAGGTCTAAGGCAGTTTTCCCAGTTGATCTACAATAAAAAATTTCTGTTGGTATTCATTCGCACCCTGGAGTCACAGAACACCTTTCAAATGAAAGATAGGTGTTACGTTGCATCTCTGTTGATGGTTGCTCTGCAAACCAAAATGGAATATGCTACAGAGATATTAAAGGACTTACTGTGCGAGTTGATACGCAAATCAGTAGCAAAGAGTCACCCAAAGCTCCTACTAAGACGAACTGAGTCTGTAGCAGAAAAGATGCTGACCAACTGGCTTGCATTCTGTATGTACAATTTTCTAAAGAATGATGCTGGAGAGCCCTTGTTCATGTTATTTAAAGCAGTGAAACAACAATCTGAGAAGGGGCCAGTAGATGCAGTTACTGGAGAGGCAAGATACTCACTAAGTGAAGACAAACTTCTTCGACAGGCTCTTGACTTCAAGTCTCTTAATGTTACTGTGAGTTATGACAGTAATCAGCCTGTGACTGTTGTGCTGCTGGATTGTGACACTATCACTCAGGCCAAAGAAAAGATCTTGGATGTGTTGTTCAAGAATTCTCCATATTCAAGTCGACCTGATAAAGATGATCTTCAGCTTGAATGGGAGCAGAGTTCTGGAAGAGTTCTTTCTCTACGAGATGACGATTCTAAATCATTGATTGATGGGGAATGGAGAAATATAAATACGCTGAGTTATTATCAGGTGACAGATAATGCTGCATTGAAGCTTGTCGCTGGACAAAGATACTTTTGCAGCTCAACAGACTCTGGTGAGCAATTCTACTCCAGCATAACAAACCCCACTGATAGAACAAACCCGGCTCATAGCACAAACCTAGCTAATGGAACAAACATGGCTGATAGAACAAACACGGCTGATAGAACAAACCCGGCTCATAGCACAAACCTAGCTAATGGAACAAACATGGCTGATAGAACAAACACGGCTGATAGAACAAACCCGGCTGATGGAACAAACATGGTTGATAGAACAAACCCGGCTCATAGAACAAACCTGGCTCATAGCACAAACCTAGCTGATGGCACAAACACGGCTGATATAACAAACCCTGCTGATGGAACAAACCCGGCTGATATAACAAACCCTGCTGATGGAACAAACCCGGCTGATATAACAAACTCGGCTGATAGTACAAACCCGGCTGATAGAACAAACCCGGCTGATAGACCAAACATGGTTGATAGAACAAACCCGGCTGATAGAACAAACCCGGCTGATAGACCAAACATGGTTGATAGAACAAACCCGGCTGATAGAACAAACCCGGCTCATAGCACAAACCCGGCTGATAGAACAAACCTAAACAAACTCGGCTCAGAGCACAAACCTAGCTGA

Transcript

OS493_030611-T1

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q80UG2	Plexin-A4 OS=Mus musculus OX=10090 GN=Plxna4 PE=1 SV=3
Q9HCM2	Plexin-A4 OS=Homo sapiens OX=9606 GN=PLXNA4 PE=1 SV=4
Q6BEA0	Plexin-A4 OS=Danio rerio OX=7955 GN=plxna4 PE=2 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0001614 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF01437 all species →	PSI	Plexin repeat	Family	Interproscan
PF18020 all species →	TIG_2	TIG domain found in plexin	Domain	Interproscan
PF20170 all species →	Plexin_RBD	Plexin cytoplasmic RhoGTPase-binding domain	Domain	Interproscan
PF08337 all species →	Plexin_cytopl	Plexin cytoplasmic RasGAP domain	Domain	Interproscan
PF17960 all species →	TIG_plexin	TIG domain	Domain	Interproscan
PF01833 all species →	TIG	IPT/TIG domain	Domain	Interproscan
PF01403 all species →	Sema	Sema domain	Repeat	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR014756 all species →	Homologous_superfamily	Immunoglobulin E-set	Interproscan
IPR002909 all species →	Domain	IPT domain	Interproscan
IPR002165 all species →	Repeat	Plexin repeat	Interproscan
IPR041362 all species →	Domain	Plexin, TIG domain 2	Interproscan
IPR046800 all species →	Domain	Plexin, cytoplasmic RhoGTPase-binding domain	Interproscan
IPR036352 all species →	Homologous_superfamily	Sema domain superfamily	Interproscan
IPR031148 all species →	Family	Plexin family	Interproscan
IPR001627 all species →	Domain	Sema domain	Interproscan
IPR015943 all species →	Homologous_superfamily	WD40/YVTN repeat-like-containing domain superfamily	Interproscan
IPR013548 all species →	Domain	Plexin, cytoplasmic RasGAP domain	Interproscan
IPR041019 all species →	Domain	Plexin, TIG domain 1	Interproscan
IPR013783 all species →	Homologous_superfamily	Immunoglobulin-like fold	Interproscan
IPR008936 all species →	Homologous_superfamily	Rho GTPase activation protein	Interproscan
IPR016201 all species →	Domain	PSI domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR22625 all species →	PLEXIN	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0017154 all species →	Molecular Function	semaphorin receptor activity	Interproscan
GO:0002116 all species →	Cellular Component	semaphorin receptor complex	Interproscan
GO:0005887 all species →	Cellular Component	plasma membrane	Interproscan
GO:0030334 all species →	Biological Process	regulation of cell migration	Interproscan
GO:0071526 all species →	Biological Process	semaphorin-plexin signaling pathway	Interproscan
GO:1902287 all species →	Biological Process	semaphorin-plexin signaling pathway involved in axon guidance	Interproscan
GO:0005515 all species →	Molecular Function	protein binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K06820	PLXNA; plexin A	-	Axon guidance	ko04360	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern

Expression trend for OS493_030611-T1 global co-expression network