Gene detail

Detailed information of OS493_030690-T1 in Lophelia pertusa

Genomic Location: scaffold_201:162645...164974
NR annotation: KAJ7377096.1, hypothetical protein OS493_030690 [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
P22392	Nucleoside diphosphate kinase B OS=Homo sapiens OX=9606 GN=NME2 PE=1 SV=1
Q5RFH3	Nucleoside diphosphate kinase B OS=Pongo abelii OX=9601 GN=NME2 PE=2 SV=1
P19804	Nucleoside diphosphate kinase B OS=Rattus norvegicus OX=10116 GN=Nme2 PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0001871 (this species only) · gene tree & orthology

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00334 all species →	NDK	Nucleoside diphosphate kinase	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR034907 all species →	Domain	Nucleoside diphosphate kinase-like domain	Interproscan
IPR036850 all species →	Homologous_superfamily	Nucleoside diphosphate kinase-like domain superfamily	Interproscan
IPR023005 all species →	Active_site	Nucleoside diphosphate kinase, active site	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR11349 all species →	NUCLEOSIDE DIPHOSPHATE KINASE	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0004550 all species →	Molecular Function	nucleoside diphosphate kinase activity	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K00940	ndk, NME; nucleoside-diphosphate kinase	EC:2.7.4.6	Membrane trafficking	ko04131	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of OS493_030690-T1 across 110 RNA-seq samples of Lophelia pertusa. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

110Samples

110TPM > 0

7Conditions

2,021.8Max TPM

861.1Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
polyp at pH7 9	18	18	1,371.53	2,021.84
polyp at pH7 6	18	18	1,333.36	1,702.16
coral polyp · control treatment	16	16	618.86	1,029.98
coral polyp · oil and dispersant treatment	16	16	529.82	990.65
coral polyp · oil treatment	16	16	655.18	923.46
coral polyp · dispersant treatment	16	16	495.54	867.50
Polyp	10	10	924.79	1,258.77

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR11359494	polyp at pH7 9	not recorded	not recorded	not recorded	-	2,021.84
SRR11359495	polyp at pH7 9	not recorded	not recorded	not recorded	-	1,930.32
SRR11359508	polyp at pH7 9	not recorded	not recorded	not recorded	-	1,750.61
SRR11359509	polyp at pH7 9	not recorded	not recorded	not recorded	-	1,720.36
SRR11359507	polyp at pH7 9	not recorded	not recorded	not recorded	-	1,412.46
SRR11359498	polyp at pH7 9	not recorded	not recorded	not recorded	-	1,365.06
SRR11359499	polyp at pH7 9	not recorded	not recorded	not recorded	-	1,364.29
SRR11359496	polyp at pH7 9	not recorded	not recorded	not recorded	-	1,358.22
SRR11359506	polyp at pH7 9	not recorded	not recorded	not recorded	-	1,351.59
SRR11359497	polyp at pH7 9	not recorded	not recorded	not recorded	-	1,333.25
SRR11359521	polyp at pH7 9	not recorded	not recorded	not recorded	-	1,266.09
SRR11359520	polyp at pH7 9	not recorded	not recorded	not recorded	-	1,227.02
SRR11359510	polyp at pH7 9	not recorded	not recorded	not recorded	-	1,187.34
SRR11359511	polyp at pH7 9	not recorded	not recorded	not recorded	-	1,173.54
SRR11359518	polyp at pH7 9	not recorded	not recorded	not recorded	-	1,098.23
SRR11359519	polyp at pH7 9	not recorded	not recorded	not recorded	-	1,071.95
SRR11359523	polyp at pH7 9	not recorded	not recorded	not recorded	-	1,049.05
SRR11359522	polyp at pH7 9	not recorded	not recorded	not recorded	-	1,006.21
SRR11359503	polyp at pH7 6	not recorded	not recorded	not recorded	-	1,702.16
SRR11359502	polyp at pH7 6	not recorded	not recorded	not recorded	-	1,624.10
SRR11359512	polyp at pH7 6	not recorded	not recorded	not recorded	-	1,472.80
SRR11359527	polyp at pH7 6	not recorded	not recorded	not recorded	-	1,444.13
SRR11359501	polyp at pH7 6	not recorded	not recorded	not recorded	-	1,417.60
SRR11359513	polyp at pH7 6	not recorded	not recorded	not recorded	-	1,417.46
SRR11359526	polyp at pH7 6	not recorded	not recorded	not recorded	-	1,409.94
SRR11359500	polyp at pH7 6	not recorded	not recorded	not recorded	-	1,407.07
SRR11359525	polyp at pH7 6	not recorded	not recorded	not recorded	-	1,398.23
SRR11359524	polyp at pH7 6	not recorded	not recorded	not recorded	-	1,356.15
SRR11359505	polyp at pH7 6	not recorded	not recorded	not recorded	-	1,287.31
SRR11359504	polyp at pH7 6	not recorded	not recorded	not recorded	-	1,275.09
SRR11359514	polyp at pH7 6	not recorded	not recorded	not recorded	-	1,212.21
SRR11359515	polyp at pH7 6	not recorded	not recorded	not recorded	-	1,188.05
SRR11359529	polyp at pH7 6	not recorded	not recorded	not recorded	-	1,153.76
SRR11359528	polyp at pH7 6	not recorded	not recorded	not recorded	-	1,130.86
SRR11359516	polyp at pH7 6	not recorded	not recorded	not recorded	-	1,063.52
SRR11359517	polyp at pH7 6	not recorded	not recorded	not recorded	-	1,040.05
SRR16705992	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	1,029.98
SRR16705975	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	894.47
SRR16705943	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	785.57
SRR16705960	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	770.36
SRR16705970	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	750.30
SRR16705991	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	693.86
SRR16705989	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	671.94
SRR16705974	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	632.80
SRR16705946	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	628.33
SRR16705957	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	581.68
SRR16705972	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	531.44
SRR16705971	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	477.86
SRR16705942	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	464.86
SRR16705965	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	448.41
SRR16705990	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	316.15
SRR16705973	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	223.67
SRR16705982	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	990.65
SRR16705994	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	711.10
SRR16705948	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	684.91
SRR16705976	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	630.63
SRR16705947	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	575.97
SRR16705944	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	520.43
SRR16705997	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	515.57
SRR16705978	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	505.65
SRR16706005	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	499.61
SRR16705979	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	459.24
SRR16706004	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	454.44
SRR16705996	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	451.28
SRR16705945	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	428.50
SRR16705993	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	410.26
SRR16705995	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	362.20
SRR16705977	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	276.66
SRR16705998	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	923.46
SRR16705963	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	825.86
SRR16705980	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	819.97
SRR16705962	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	732.85
SRR16705964	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	717.21
SRR16706000	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	707.72
SRR16705952	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	682.13
SRR16705984	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	678.23
SRR16705951	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	642.07
SRR16705950	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	621.39
SRR16705949	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	619.55
SRR16705983	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	576.43
SRR16705961	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	556.43
SRR16705981	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	500.01
SRR16705999	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	448.89
SRR16706001	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	430.72
SRR16705985	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	867.50
SRR16705953	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	684.27
SRR16705956	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	622.27
SRR16706002	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	595.53
SRR16705988	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	546.41
SRR16705959	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	518.10
SRR16705986	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	500.25
SRR16705969	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	488.51
SRR16705955	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	434.20
SRR16706003	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	428.50
SRR16705966	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	417.15
SRR16705967	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	393.77
SRR16705987	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	391.07
SRR16705958	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	370.42
SRR16705954	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	365.30
SRR16705968	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	305.38
SRR23025713	Polyp	not recorded	not recorded	not recorded	-	1,258.77
SRR23025710	Polyp	not recorded	not recorded	not recorded	-	1,235.71
SRR23025712	Polyp	not recorded	not recorded	not recorded	-	1,171.19
SRR23025711	Polyp	not recorded	not recorded	not recorded	-	1,125.70
SRR23025708	Polyp	not recorded	not recorded	not recorded	-	1,025.85
SRR23025709	Polyp	not recorded	not recorded	not recorded	-	834.75
SRR7746666	Polyp	not recorded	not recorded	not recorded	-	734.81
SRR7746669	Polyp	not recorded	not recorded	not recorded	-	727.24
SRR7746667	Polyp	not recorded	not recorded	not recorded	-	595.99
SRR7746668	Polyp	not recorded	not recorded	not recorded	-	537.94

Source: CnidoSite RNA-seq expression matrices (LPERT_TPM, StringTie quantification over 110 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.