Gene detail

Detailed information of OS493_030716-T1 in Lophelia pertusa

Genomic Location: scaffold_201:367965...373337
NR annotation: KAJ7377121.1, WW domain binding protein 4 [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q5F457	WW domain-binding protein 4 OS=Gallus gallus OX=9031 GN=WBP4 PE=2 SV=1
O75554	WW domain-binding protein 4 OS=Homo sapiens OX=9606 GN=WBP4 PE=1 SV=1
Q61048	WW domain-binding protein 4 OS=Mus musculus OX=10090 GN=Wbp4 PE=1 SV=4

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0006810 (this species only)

Pfam domain

No Pfam domain signature was detected for OS493_030716-T1. This gene does have a gene model — the search simply returned no hit.

InterPro

InterPro term	Type	Description	Source
IPR040023 all species →	Family	WW domain-binding protein 4	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR13173 all species →	WW DOMAIN BINDING PROTEIN 4	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0000398 all species →	Biological Process	mRNA splicing, via spliceosome	Interproscan
GO:0003723 all species →	Molecular Function	RNA binding	Interproscan
GO:0008380 all species →	Biological Process	RNA splicing	Interproscan
GO:0071011 all species →	Cellular Component	precatalytic spliceosome	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for OS493_030716-T1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of OS493_030716-T1 across 110 RNA-seq samples of Lophelia pertusa. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

110Samples

109TPM > 0

7Conditions

26.4Max TPM

9.3Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
polyp at pH7 9	18	18	8.83	16.61
polyp at pH7 6	18	18	8.87	22.02
coral polyp · control treatment	16	16	12.47	26.38
coral polyp · oil and dispersant treatment	16	16	8.70	16.35
coral polyp · oil treatment	16	16	12.17	20.66
coral polyp · dispersant treatment	16	16	5.48	10.46
Polyp	10	9	8.34	17.34

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR11359519	polyp at pH7 9	not recorded	not recorded	not recorded	-	16.61
SRR11359518	polyp at pH7 9	not recorded	not recorded	not recorded	-	14.27
SRR11359523	polyp at pH7 9	not recorded	not recorded	not recorded	-	14.15
SRR11359522	polyp at pH7 9	not recorded	not recorded	not recorded	-	10.66
SRR11359495	polyp at pH7 9	not recorded	not recorded	not recorded	-	9.61
SRR11359520	polyp at pH7 9	not recorded	not recorded	not recorded	-	9.39
SRR11359510	polyp at pH7 9	not recorded	not recorded	not recorded	-	8.97
SRR11359521	polyp at pH7 9	not recorded	not recorded	not recorded	-	8.42
SRR11359511	polyp at pH7 9	not recorded	not recorded	not recorded	-	8.41
SRR11359497	polyp at pH7 9	not recorded	not recorded	not recorded	-	7.76
SRR11359507	polyp at pH7 9	not recorded	not recorded	not recorded	-	7.29
SRR11359508	polyp at pH7 9	not recorded	not recorded	not recorded	-	7.26
SRR11359494	polyp at pH7 9	not recorded	not recorded	not recorded	-	7.02
SRR11359496	polyp at pH7 9	not recorded	not recorded	not recorded	-	6.67
SRR11359509	polyp at pH7 9	not recorded	not recorded	not recorded	-	6.40
SRR11359498	polyp at pH7 9	not recorded	not recorded	not recorded	-	5.61
SRR11359499	polyp at pH7 9	not recorded	not recorded	not recorded	-	5.44
SRR11359506	polyp at pH7 9	not recorded	not recorded	not recorded	-	5.04
SRR11359525	polyp at pH7 6	not recorded	not recorded	not recorded	-	22.02
SRR11359524	polyp at pH7 6	not recorded	not recorded	not recorded	-	12.79
SRR11359529	polyp at pH7 6	not recorded	not recorded	not recorded	-	10.09
SRR11359527	polyp at pH7 6	not recorded	not recorded	not recorded	-	9.34
SRR11359501	polyp at pH7 6	not recorded	not recorded	not recorded	-	9.27
SRR11359526	polyp at pH7 6	not recorded	not recorded	not recorded	-	9.00
SRR11359504	polyp at pH7 6	not recorded	not recorded	not recorded	-	8.33
SRR11359513	polyp at pH7 6	not recorded	not recorded	not recorded	-	8.30
SRR11359502	polyp at pH7 6	not recorded	not recorded	not recorded	-	8.30
SRR11359517	polyp at pH7 6	not recorded	not recorded	not recorded	-	8.03
SRR11359505	polyp at pH7 6	not recorded	not recorded	not recorded	-	7.92
SRR11359528	polyp at pH7 6	not recorded	not recorded	not recorded	-	7.56
SRR11359500	polyp at pH7 6	not recorded	not recorded	not recorded	-	7.32
SRR11359503	polyp at pH7 6	not recorded	not recorded	not recorded	-	7.26
SRR11359512	polyp at pH7 6	not recorded	not recorded	not recorded	-	6.54
SRR11359516	polyp at pH7 6	not recorded	not recorded	not recorded	-	6.35
SRR11359514	polyp at pH7 6	not recorded	not recorded	not recorded	-	5.81
SRR11359515	polyp at pH7 6	not recorded	not recorded	not recorded	-	5.38
SRR16705942	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	26.38
SRR16705973	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	23.54
SRR16705974	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	22.52
SRR16705946	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	14.58
SRR16705965	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	13.20
SRR16705991	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	12.68
SRR16705970	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	11.54
SRR16705960	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	11.10
SRR16705971	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	10.62
SRR16705957	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	10.60
SRR16705972	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	9.79
SRR16705990	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	8.88
SRR16705943	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	7.90
SRR16705989	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	6.24
SRR16705975	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	6.17
SRR16705992	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	3.81
SRR16705947	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	16.35
SRR16705977	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	16.31
SRR16706004	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	12.55
SRR16705978	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	10.00
SRR16705995	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	8.20
SRR16705996	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	8.18
SRR16705976	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	8.02
SRR16705982	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	7.79
SRR16705993	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	7.19
SRR16705945	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	7.17
SRR16705944	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	7.00
SRR16705994	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	6.87
SRR16705948	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	6.69
SRR16705997	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	5.97
SRR16705979	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	5.64
SRR16706005	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	5.23
SRR16705951	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	20.66
SRR16705963	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	18.57
SRR16705983	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	16.92
SRR16706000	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	16.69
SRR16705998	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	14.42
SRR16705980	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	12.80
SRR16706001	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	11.26
SRR16705949	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	10.66
SRR16705952	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	10.52
SRR16705950	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	10.17
SRR16705962	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	10.07
SRR16705981	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	9.97
SRR16705999	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	8.90
SRR16705961	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	8.75
SRR16705984	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	8.27
SRR16705964	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	6.07
SRR16705958	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	10.46
SRR16705959	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	10.37
SRR16705955	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	6.76
SRR16705953	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	6.43
SRR16705968	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	5.98
SRR16706002	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	5.91
SRR16705986	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	5.35
SRR16706003	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	5.18
SRR16705956	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	5.14
SRR16705954	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	4.57
SRR16705967	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	4.47
SRR16705988	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	4.43
SRR16705969	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	4.18
SRR16705966	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	3.29
SRR16705985	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	3.05
SRR16705987	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2.17
SRR7746667	Polyp	not recorded	not recorded	not recorded	-	17.34
SRR23025712	Polyp	not recorded	not recorded	not recorded	-	9.74
SRR23025708	Polyp	not recorded	not recorded	not recorded	-	9.46
SRR23025710	Polyp	not recorded	not recorded	not recorded	-	9.21
SRR23025709	Polyp	not recorded	not recorded	not recorded	-	8.44
SRR23025711	Polyp	not recorded	not recorded	not recorded	-	8.28
SRR7746666	Polyp	not recorded	not recorded	not recorded	-	7.76
SRR23025713	Polyp	not recorded	not recorded	not recorded	-	6.93
SRR7746668	Polyp	not recorded	not recorded	not recorded	-	6.21
SRR7746669	Polyp	not recorded	not recorded	not recorded	-	0.00

Source: CnidoSite RNA-seq expression matrices (LPERT_TPM, StringTie quantification over 110 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.