Gene detail

Detailed information of OS493_030721-T1 in Lophelia pertusa

Genomic Location: scaffold_201:384931...390040
NR annotation: KAJ7377126.1, hypothetical protein OS493_030721 [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

No Swiss-Prot hit above the reporting threshold for this gene.

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0001264 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF06439 all species →	3keto-disac_hyd	3-keto-disaccharide hydrolase	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR036056 all species →	Homologous_superfamily	Fibrinogen-like, C-terminal	Interproscan
IPR010496 all species →	Domain	3-keto-disaccharide hydrolase	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR16146 all species →	INTELECTIN	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005615 all species →	Cellular Component	extracellular space	Interproscan
GO:0070492 all species →	Molecular Function	oligosaccharide binding	Interproscan
GO:0016787 all species →	Molecular Function	hydrolase activity	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K00276	AOC3, AOC2, tynA; primary-amine oxidase	EC:1.4.3.21	Tropane, piperidine and pyridine alkaloid biosynthesis	ko00960	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of OS493_030721-T1 across 110 RNA-seq samples of Lophelia pertusa. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

110Samples

106TPM > 0

7Conditions

15.6Max TPM

4.6Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
polyp at pH7 9	18	18	7.23	15.62
polyp at pH7 6	18	18	7.16	15.10
coral polyp · control treatment	16	16	3.45	7.10
coral polyp · oil and dispersant treatment	16	15	3.40	10.01
coral polyp · oil treatment	16	16	3.58	6.56
coral polyp · dispersant treatment	16	16	4.12	10.31
Polyp	10	7	1.65	5.60

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR11359509	polyp at pH7 9	not recorded	not recorded	not recorded	-	15.62
SRR11359508	polyp at pH7 9	not recorded	not recorded	not recorded	-	14.85
SRR11359495	polyp at pH7 9	not recorded	not recorded	not recorded	-	12.57
SRR11359494	polyp at pH7 9	not recorded	not recorded	not recorded	-	11.90
SRR11359507	polyp at pH7 9	not recorded	not recorded	not recorded	-	10.06
SRR11359506	polyp at pH7 9	not recorded	not recorded	not recorded	-	9.31
SRR11359497	polyp at pH7 9	not recorded	not recorded	not recorded	-	7.61
SRR11359511	polyp at pH7 9	not recorded	not recorded	not recorded	-	6.16
SRR11359498	polyp at pH7 9	not recorded	not recorded	not recorded	-	5.65
SRR11359510	polyp at pH7 9	not recorded	not recorded	not recorded	-	5.65
SRR11359496	polyp at pH7 9	not recorded	not recorded	not recorded	-	5.55
SRR11359499	polyp at pH7 9	not recorded	not recorded	not recorded	-	5.00
SRR11359520	polyp at pH7 9	not recorded	not recorded	not recorded	-	4.68
SRR11359521	polyp at pH7 9	not recorded	not recorded	not recorded	-	4.08
SRR11359519	polyp at pH7 9	not recorded	not recorded	not recorded	-	3.10
SRR11359518	polyp at pH7 9	not recorded	not recorded	not recorded	-	3.04
SRR11359522	polyp at pH7 9	not recorded	not recorded	not recorded	-	2.79
SRR11359523	polyp at pH7 9	not recorded	not recorded	not recorded	-	2.60
SRR11359501	polyp at pH7 6	not recorded	not recorded	not recorded	-	15.10
SRR11359500	polyp at pH7 6	not recorded	not recorded	not recorded	-	13.56
SRR11359512	polyp at pH7 6	not recorded	not recorded	not recorded	-	12.20
SRR11359515	polyp at pH7 6	not recorded	not recorded	not recorded	-	10.57
SRR11359514	polyp at pH7 6	not recorded	not recorded	not recorded	-	9.97
SRR11359513	polyp at pH7 6	not recorded	not recorded	not recorded	-	9.73
SRR11359505	polyp at pH7 6	not recorded	not recorded	not recorded	-	7.74
SRR11359504	polyp at pH7 6	not recorded	not recorded	not recorded	-	7.44
SRR11359517	polyp at pH7 6	not recorded	not recorded	not recorded	-	7.32
SRR11359516	polyp at pH7 6	not recorded	not recorded	not recorded	-	6.77
SRR11359502	polyp at pH7 6	not recorded	not recorded	not recorded	-	6.19
SRR11359503	polyp at pH7 6	not recorded	not recorded	not recorded	-	6.05
SRR11359525	polyp at pH7 6	not recorded	not recorded	not recorded	-	4.15
SRR11359524	polyp at pH7 6	not recorded	not recorded	not recorded	-	4.11
SRR11359527	polyp at pH7 6	not recorded	not recorded	not recorded	-	2.13
SRR11359528	polyp at pH7 6	not recorded	not recorded	not recorded	-	2.06
SRR11359526	polyp at pH7 6	not recorded	not recorded	not recorded	-	2.00
SRR11359529	polyp at pH7 6	not recorded	not recorded	not recorded	-	1.81
SRR16705960	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	7.10
SRR16705991	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	6.12
SRR16705946	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	5.32
SRR16705972	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	4.76
SRR16705965	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	4.55
SRR16705975	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	4.12
SRR16705943	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	3.80
SRR16705974	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	3.61
SRR16705990	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	3.35
SRR16705942	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	2.84
SRR16705971	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	2.30
SRR16705970	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	2.03
SRR16705989	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	2.03
SRR16705973	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	1.45
SRR16705957	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	1.16
SRR16705992	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	0.67
SRR16706004	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	10.01
SRR16705948	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	7.14
SRR16705997	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	5.45
SRR16705978	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	4.88
SRR16705982	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	4.26
SRR16705979	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	3.73
SRR16705993	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	3.72
SRR16705976	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	3.20
SRR16705944	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	2.40
SRR16705945	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	2.27
SRR16705995	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	2.17
SRR16706005	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	2.01
SRR16705947	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	1.69
SRR16705996	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	0.81
SRR16705994	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	0.63
SRR16705977	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	0.00
SRR16705950	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	6.56
SRR16705999	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	5.91
SRR16706000	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	5.78
SRR16705951	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	5.69
SRR16705998	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	4.90
SRR16705981	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	4.84
SRR16705949	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	4.72
SRR16706001	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	3.25
SRR16705952	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	3.10
SRR16705983	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	2.86
SRR16705984	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	2.40
SRR16705963	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	1.78
SRR16705964	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	1.77
SRR16705980	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	1.56
SRR16705961	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	1.39
SRR16705962	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	0.83
SRR16706003	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	10.31
SRR16706002	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	7.57
SRR16705954	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	5.95
SRR16705986	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	5.78
SRR16705959	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	5.19
SRR16705987	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	4.43
SRR16705988	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	4.16
SRR16705955	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	3.99
SRR16705968	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	3.82
SRR16705956	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	3.68
SRR16705958	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	3.19
SRR16705967	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2.82
SRR16705969	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2.81
SRR16705966	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.40
SRR16705985	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.71
SRR16705953	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.13
SRR23025713	Polyp	not recorded	not recorded	not recorded	-	5.60
SRR23025709	Polyp	not recorded	not recorded	not recorded	-	4.77
SRR23025708	Polyp	not recorded	not recorded	not recorded	-	3.52
SRR23025710	Polyp	not recorded	not recorded	not recorded	-	1.12
SRR23025712	Polyp	not recorded	not recorded	not recorded	-	0.59
SRR7746666	Polyp	not recorded	not recorded	not recorded	-	0.45
SRR23025711	Polyp	not recorded	not recorded	not recorded	-	0.41
SRR7746667	Polyp	not recorded	not recorded	not recorded	-	0.00
SRR7746668	Polyp	not recorded	not recorded	not recorded	-	0.00
SRR7746669	Polyp	not recorded	not recorded	not recorded	-	0.00

Source: CnidoSite RNA-seq expression matrices (LPERT_TPM, StringTie quantification over 110 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.