Gene detail

Detailed information of OS493_030756-T1 in Lophelia pertusa

Genomic Location: scaffold_201:743175...745378
NR annotation: KAJ7377157.1, adenylate cyclase, partial [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q6AYS7	Aminoacylase-1A OS=Rattus norvegicus OX=10116 GN=Acy1a PE=1 SV=1
Q99JW2	Aminoacylase-1 OS=Mus musculus OX=10090 GN=Acy1 PE=1 SV=1
Q6PTT0	Aminoacylase-1B OS=Rattus norvegicus OX=10116 GN=Acy1b PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0008516 (this species only) · gene tree & orthology

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF01546 all species →	Peptidase_M20	Peptidase family M20/M25/M40	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR052083 all species →	Family	Aminoacylase-1 peptidase M20A	Interproscan
IPR002933 all species →	Family	Peptidase M20	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR45892 all species →	AMINOACYLASE-1	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0004046 all species →	Molecular Function	aminoacylase activity	Interproscan
GO:0016787 all species →	Molecular Function	hydrolase activity	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for OS493_030756-T1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of OS493_030756-T1 across 110 RNA-seq samples of Lophelia pertusa. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

110Samples

110TPM > 0

7Conditions

107.5Max TPM

32.5Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
polyp at pH7 9	18	18	32.54	63.53
polyp at pH7 6	18	18	35.83	47.16
coral polyp · control treatment	16	16	38.43	107.51
coral polyp · oil and dispersant treatment	16	16	26.32	78.57
coral polyp · oil treatment	16	16	32.49	49.23
coral polyp · dispersant treatment	16	16	22.23	38.22
Polyp	10	10	42.96	68.08

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR11359495	polyp at pH7 9	not recorded	not recorded	not recorded	-	63.53
SRR11359494	polyp at pH7 9	not recorded	not recorded	not recorded	-	56.35
SRR11359518	polyp at pH7 9	not recorded	not recorded	not recorded	-	37.71
SRR11359522	polyp at pH7 9	not recorded	not recorded	not recorded	-	35.43
SRR11359523	polyp at pH7 9	not recorded	not recorded	not recorded	-	33.79
SRR11359519	polyp at pH7 9	not recorded	not recorded	not recorded	-	31.53
SRR11359508	polyp at pH7 9	not recorded	not recorded	not recorded	-	30.29
SRR11359507	polyp at pH7 9	not recorded	not recorded	not recorded	-	29.93
SRR11359510	polyp at pH7 9	not recorded	not recorded	not recorded	-	29.69
SRR11359499	polyp at pH7 9	not recorded	not recorded	not recorded	-	29.08
SRR11359511	polyp at pH7 9	not recorded	not recorded	not recorded	-	28.92
SRR11359521	polyp at pH7 9	not recorded	not recorded	not recorded	-	28.69
SRR11359506	polyp at pH7 9	not recorded	not recorded	not recorded	-	28.32
SRR11359520	polyp at pH7 9	not recorded	not recorded	not recorded	-	26.90
SRR11359496	polyp at pH7 9	not recorded	not recorded	not recorded	-	25.42
SRR11359509	polyp at pH7 9	not recorded	not recorded	not recorded	-	24.51
SRR11359497	polyp at pH7 9	not recorded	not recorded	not recorded	-	22.87
SRR11359498	polyp at pH7 9	not recorded	not recorded	not recorded	-	22.70
SRR11359501	polyp at pH7 6	not recorded	not recorded	not recorded	-	47.16
SRR11359516	polyp at pH7 6	not recorded	not recorded	not recorded	-	44.67
SRR11359529	polyp at pH7 6	not recorded	not recorded	not recorded	-	43.44
SRR11359504	polyp at pH7 6	not recorded	not recorded	not recorded	-	43.20
SRR11359505	polyp at pH7 6	not recorded	not recorded	not recorded	-	42.61
SRR11359512	polyp at pH7 6	not recorded	not recorded	not recorded	-	42.21
SRR11359517	polyp at pH7 6	not recorded	not recorded	not recorded	-	38.06
SRR11359528	polyp at pH7 6	not recorded	not recorded	not recorded	-	37.16
SRR11359524	polyp at pH7 6	not recorded	not recorded	not recorded	-	36.48
SRR11359502	polyp at pH7 6	not recorded	not recorded	not recorded	-	33.80
SRR11359526	polyp at pH7 6	not recorded	not recorded	not recorded	-	33.11
SRR11359500	polyp at pH7 6	not recorded	not recorded	not recorded	-	32.80
SRR11359525	polyp at pH7 6	not recorded	not recorded	not recorded	-	31.57
SRR11359515	polyp at pH7 6	not recorded	not recorded	not recorded	-	29.80
SRR11359527	polyp at pH7 6	not recorded	not recorded	not recorded	-	29.46
SRR11359513	polyp at pH7 6	not recorded	not recorded	not recorded	-	27.96
SRR11359503	polyp at pH7 6	not recorded	not recorded	not recorded	-	26.29
SRR11359514	polyp at pH7 6	not recorded	not recorded	not recorded	-	25.20
SRR16705973	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	107.51
SRR16705965	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	61.58
SRR16705957	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	50.63
SRR16705970	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	40.02
SRR16705971	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	39.43
SRR16705960	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	38.76
SRR16705946	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	37.85
SRR16705972	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	30.43
SRR16705942	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	30.33
SRR16705974	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	28.98
SRR16705975	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	28.30
SRR16705989	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	25.74
SRR16705943	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	25.57
SRR16705992	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	25.18
SRR16705990	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	22.54
SRR16705991	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	21.98
SRR16705977	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	78.57
SRR16705948	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	33.16
SRR16705982	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	32.83
SRR16705993	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	31.65
SRR16706005	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	30.27
SRR16705995	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	29.72
SRR16705976	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	29.70
SRR16705997	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	26.03
SRR16705979	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	24.53
SRR16705994	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	19.40
SRR16705944	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	18.27
SRR16705945	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	18.03
SRR16706004	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	17.14
SRR16705947	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	14.17
SRR16705978	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	9.81
SRR16705996	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	7.83
SRR16705999	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	49.23
SRR16705998	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	45.55
SRR16706001	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	44.96
SRR16705981	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	41.17
SRR16705950	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	35.99
SRR16705984	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	34.16
SRR16705980	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	33.25
SRR16705961	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	31.00
SRR16705949	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	30.64
SRR16705952	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	30.34
SRR16705964	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	29.28
SRR16706000	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	25.76
SRR16705951	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	25.48
SRR16705962	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	24.22
SRR16705983	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	23.61
SRR16705963	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	15.21
SRR16705959	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	38.22
SRR16706002	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	30.59
SRR16705954	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	28.56
SRR16706003	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	27.08
SRR16705958	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	26.86
SRR16705986	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	23.66
SRR16705956	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	23.58
SRR16705953	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	23.15
SRR16705988	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	22.41
SRR16705967	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	21.93
SRR16705969	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	21.91
SRR16705966	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	19.13
SRR16705955	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	15.66
SRR16705968	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	11.64
SRR16705987	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	11.00
SRR16705985	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	10.23
SRR23025712	Polyp	not recorded	not recorded	not recorded	-	68.08
SRR23025710	Polyp	not recorded	not recorded	not recorded	-	63.51
SRR23025708	Polyp	not recorded	not recorded	not recorded	-	59.93
SRR23025713	Polyp	not recorded	not recorded	not recorded	-	47.96
SRR7746667	Polyp	not recorded	not recorded	not recorded	-	39.66
SRR23025711	Polyp	not recorded	not recorded	not recorded	-	36.80
SRR23025709	Polyp	not recorded	not recorded	not recorded	-	35.88
SRR7746669	Polyp	not recorded	not recorded	not recorded	-	33.95
SRR7746668	Polyp	not recorded	not recorded	not recorded	-	26.86
SRR7746666	Polyp	not recorded	not recorded	not recorded	-	16.98

Source: CnidoSite RNA-seq expression matrices (LPERT_TPM, StringTie quantification over 110 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.