Gene detail

Detailed information of OS493_030842-T1 in Lophelia pertusa

Genomic Location: scaffold_203:602075...604854
NR annotation: KAJ7353992.1, hypothetical protein OS493_030842 [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

No Swiss-Prot hit above the reporting threshold for this gene.

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0002035 (this species only)

Pfam domain

No Pfam domain signature was detected for OS493_030842-T1. This gene does have a gene model — the search simply returned no hit.

InterPro

No InterPro signature was detected for OS493_030842-T1. This gene does have a gene model — the search simply returned no hit.

PANTHER

PANTHER term	Description	Source
PTHR33487 all species →	CILIA- AND FLAGELLA-ASSOCIATED PROTEIN 54	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0060271 all species →	Biological Process	cilium assembly	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for OS493_030842-T1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of OS493_030842-T1 across 110 RNA-seq samples of Lophelia pertusa. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

110Samples

109TPM > 0

7Conditions

49.4Max TPM

8.8Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
polyp at pH7 9	18	18	7.49	9.84
polyp at pH7 6	18	18	7.49	15.31
coral polyp · control treatment	16	16	11.12	40.82
coral polyp · oil and dispersant treatment	16	16	9.33	49.40
coral polyp · oil treatment	16	16	9.66	18.41
coral polyp · dispersant treatment	16	16	6.69	12.88
Polyp	10	9	11.46	19.96

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR11359519	polyp at pH7 9	not recorded	not recorded	not recorded	-	9.84
SRR11359521	polyp at pH7 9	not recorded	not recorded	not recorded	-	9.56
SRR11359497	polyp at pH7 9	not recorded	not recorded	not recorded	-	9.51
SRR11359522	polyp at pH7 9	not recorded	not recorded	not recorded	-	9.01
SRR11359523	polyp at pH7 9	not recorded	not recorded	not recorded	-	8.76
SRR11359510	polyp at pH7 9	not recorded	not recorded	not recorded	-	8.11
SRR11359509	polyp at pH7 9	not recorded	not recorded	not recorded	-	7.73
SRR11359518	polyp at pH7 9	not recorded	not recorded	not recorded	-	7.68
SRR11359511	polyp at pH7 9	not recorded	not recorded	not recorded	-	7.62
SRR11359495	polyp at pH7 9	not recorded	not recorded	not recorded	-	7.25
SRR11359520	polyp at pH7 9	not recorded	not recorded	not recorded	-	7.22
SRR11359506	polyp at pH7 9	not recorded	not recorded	not recorded	-	7.08
SRR11359496	polyp at pH7 9	not recorded	not recorded	not recorded	-	6.83
SRR11359508	polyp at pH7 9	not recorded	not recorded	not recorded	-	6.60
SRR11359494	polyp at pH7 9	not recorded	not recorded	not recorded	-	6.41
SRR11359507	polyp at pH7 9	not recorded	not recorded	not recorded	-	5.84
SRR11359498	polyp at pH7 9	not recorded	not recorded	not recorded	-	4.97
SRR11359499	polyp at pH7 9	not recorded	not recorded	not recorded	-	4.83
SRR11359501	polyp at pH7 6	not recorded	not recorded	not recorded	-	15.31
SRR11359500	polyp at pH7 6	not recorded	not recorded	not recorded	-	12.77
SRR11359524	polyp at pH7 6	not recorded	not recorded	not recorded	-	11.89
SRR11359525	polyp at pH7 6	not recorded	not recorded	not recorded	-	10.47
SRR11359505	polyp at pH7 6	not recorded	not recorded	not recorded	-	8.52
SRR11359512	polyp at pH7 6	not recorded	not recorded	not recorded	-	7.97
SRR11359529	polyp at pH7 6	not recorded	not recorded	not recorded	-	7.30
SRR11359504	polyp at pH7 6	not recorded	not recorded	not recorded	-	7.25
SRR11359517	polyp at pH7 6	not recorded	not recorded	not recorded	-	6.59
SRR11359528	polyp at pH7 6	not recorded	not recorded	not recorded	-	6.57
SRR11359516	polyp at pH7 6	not recorded	not recorded	not recorded	-	6.17
SRR11359513	polyp at pH7 6	not recorded	not recorded	not recorded	-	5.53
SRR11359502	polyp at pH7 6	not recorded	not recorded	not recorded	-	5.49
SRR11359515	polyp at pH7 6	not recorded	not recorded	not recorded	-	5.20
SRR11359527	polyp at pH7 6	not recorded	not recorded	not recorded	-	4.82
SRR11359526	polyp at pH7 6	not recorded	not recorded	not recorded	-	4.54
SRR11359514	polyp at pH7 6	not recorded	not recorded	not recorded	-	4.19
SRR11359503	polyp at pH7 6	not recorded	not recorded	not recorded	-	4.18
SRR16705973	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	40.82
SRR16705990	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	17.97
SRR16705992	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	14.05
SRR16705965	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	13.82
SRR16705971	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	12.98
SRR16705970	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	10.24
SRR16705989	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	9.11
SRR16705972	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	8.97
SRR16705942	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	8.73
SRR16705946	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	7.39
SRR16705991	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	6.20
SRR16705960	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	6.19
SRR16705957	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	5.88
SRR16705974	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	5.75
SRR16705943	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	5.13
SRR16705975	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	4.64
SRR16705977	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	49.40
SRR16705945	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	10.91
SRR16705995	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	9.67
SRR16705993	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	8.64
SRR16705982	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	8.14
SRR16706005	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	7.73
SRR16705976	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	6.93
SRR16705944	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	6.66
SRR16705948	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	6.56
SRR16705994	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	6.44
SRR16705947	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	5.69
SRR16706004	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	5.35
SRR16705996	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	5.19
SRR16705997	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	4.70
SRR16705979	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	4.38
SRR16705978	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	2.90
SRR16705962	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	18.41
SRR16705981	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	14.99
SRR16705999	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	11.99
SRR16706001	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	10.46
SRR16705952	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	10.07
SRR16705949	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	9.57
SRR16705980	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	9.56
SRR16705998	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	9.48
SRR16705984	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	8.43
SRR16705961	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	8.36
SRR16706000	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	7.94
SRR16705983	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	7.70
SRR16705964	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	7.47
SRR16705950	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	7.15
SRR16705963	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	6.69
SRR16705951	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	6.24
SRR16705986	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	12.88
SRR16705958	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	11.18
SRR16705954	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	10.88
SRR16706002	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	7.58
SRR16705967	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	7.48
SRR16705969	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	7.30
SRR16706003	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	7.02
SRR16705966	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	6.66
SRR16705959	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	6.10
SRR16705968	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	5.42
SRR16705956	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	4.55
SRR16705955	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	4.49
SRR16705987	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	4.47
SRR16705988	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	4.46
SRR16705953	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	3.49
SRR16705985	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	3.08
SRR23025708	Polyp	not recorded	not recorded	not recorded	-	19.96
SRR23025712	Polyp	not recorded	not recorded	not recorded	-	18.18
SRR23025709	Polyp	not recorded	not recorded	not recorded	-	15.60
SRR23025710	Polyp	not recorded	not recorded	not recorded	-	15.34
SRR23025713	Polyp	not recorded	not recorded	not recorded	-	12.77
SRR23025711	Polyp	not recorded	not recorded	not recorded	-	11.07
SRR7746668	Polyp	not recorded	not recorded	not recorded	-	9.04
SRR7746667	Polyp	not recorded	not recorded	not recorded	-	8.62
SRR7746666	Polyp	not recorded	not recorded	not recorded	-	4.03
SRR7746669	Polyp	not recorded	not recorded	not recorded	-	0.00

Source: CnidoSite RNA-seq expression matrices (LPERT_TPM, StringTie quantification over 110 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.