Gene detail

Detailed information of OS493_030855-T1 in Lophelia pertusa

Genomic Location: scaffold_204:107545...120477
NR annotation: KAJ7323733.1, hypothetical protein OS493_030855 [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q6NRK1	Afadin- and alpha-actinin-binding protein A OS=Xenopus laevis OX=8355 GN=ssx2ip-a PE=1 SV=1
Q9Y2D8	Afadin- and alpha-actinin-binding protein OS=Homo sapiens OX=9606 GN=SSX2IP PE=1 SV=3
Q8CGZ2	Afadin- and alpha-actinin-binding protein OS=Rattus norvegicus OX=10116 GN=Ssx2ip PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0005088 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF11559 all species →	ADIP	Afadin- and alpha -actinin-Binding	Coiled-coil	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR021622 all species →	Family	Afadin/alpha-actinin-binding	Interproscan
IPR052300 all species →	Family	Adhesion and Centrosome-associated Protein	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR46507 all species →	AFADIN- AND ALPHA-ACTININ-BINDING PROTEIN	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0034451 all species →	Cellular Component	centriolar satellite	Interproscan
GO:0035735 all species →	Biological Process	intraciliary transport involved in cilium assembly	Interproscan
GO:0036064 all species →	Cellular Component	ciliary basal body	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K06085	SSX2IP, ADIP; synovial sarcoma, X breakpoint 2 interacting protein	-	Chromosome and associated proteins	ko03036	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern

Expression trend for OS493_030855-T1 global co-expression network