Gene detail

Detailed information of OS493_030890-T1 in Lophelia pertusa

Genomic Location: scaffold_204:557139...570804
NR annotation: KAJ7323764.1, Transmembrane protease serine 6 [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q9ES87	Prostasin OS=Rattus norvegicus OX=10116 GN=Prss8 PE=2 SV=3
Q9ESD1	Prostasin OS=Mus musculus OX=10090 GN=Prss8 PE=2 SV=2
Q16651	Prostasin OS=Homo sapiens OX=9606 GN=PRSS8 PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0000120 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00089 all species →	Trypsin	Trypsin	Domain	Interproscan
PF01549 all species →	ShK	ShK domain-like	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001254 all species →	Domain	Serine proteases, trypsin domain	Interproscan
IPR018114 all species →	Active_site	Serine proteases, trypsin family, histidine active site	Interproscan
IPR003582 all species →	Domain	ShKT domain	Interproscan
IPR043504 all species →	Homologous_superfamily	Peptidase S1, PA clan, chymotrypsin-like fold	Interproscan
IPR001314 all species →	Family	Peptidase S1A, chymotrypsin family	Interproscan
IPR033116 all species →	Active_site	Serine proteases, trypsin family, serine active site	Interproscan
IPR012224 all species →	Family	Peptidase S1A, coagulation factor VII/IX/X/C/Z	Interproscan
IPR009003 all species →	Homologous_superfamily	Peptidase S1, PA clan	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR24252 all species →	ACROSIN-RELATED	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0004252 all species →	Molecular Function	serine-type endopeptidase activity	Interproscan
GO:0006508 all species →	Biological Process	proteolysis	Interproscan
GO:0005509 all species →	Molecular Function	calcium ion binding	Interproscan
GO:0007596 all species →	Biological Process	blood coagulation	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for OS493_030890-T1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of OS493_030890-T1 across 110 RNA-seq samples of Lophelia pertusa. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

110Samples

110TPM > 0

7Conditions

146.7Max TPM

40.2Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
polyp at pH7 9	18	18	34.09	71.16
polyp at pH7 6	18	18	45.48	82.45
coral polyp · control treatment	16	16	40.89	72.88
coral polyp · oil and dispersant treatment	16	16	42.01	85.50
coral polyp · oil treatment	16	16	52.72	146.74
coral polyp · dispersant treatment	16	16	33.53	76.22
Polyp	10	10	28.78	87.30

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR11359519	polyp at pH7 9	not recorded	not recorded	not recorded	-	71.16
SRR11359518	polyp at pH7 9	not recorded	not recorded	not recorded	-	60.44
SRR11359523	polyp at pH7 9	not recorded	not recorded	not recorded	-	48.49
SRR11359522	polyp at pH7 9	not recorded	not recorded	not recorded	-	47.93
SRR11359495	polyp at pH7 9	not recorded	not recorded	not recorded	-	35.99
SRR11359521	polyp at pH7 9	not recorded	not recorded	not recorded	-	32.14
SRR11359494	polyp at pH7 9	not recorded	not recorded	not recorded	-	31.97
SRR11359520	polyp at pH7 9	not recorded	not recorded	not recorded	-	31.23
SRR11359499	polyp at pH7 9	not recorded	not recorded	not recorded	-	30.66
SRR11359498	polyp at pH7 9	not recorded	not recorded	not recorded	-	30.35
SRR11359511	polyp at pH7 9	not recorded	not recorded	not recorded	-	29.85
SRR11359506	polyp at pH7 9	not recorded	not recorded	not recorded	-	28.93
SRR11359507	polyp at pH7 9	not recorded	not recorded	not recorded	-	26.33
SRR11359510	polyp at pH7 9	not recorded	not recorded	not recorded	-	25.80
SRR11359509	polyp at pH7 9	not recorded	not recorded	not recorded	-	24.00
SRR11359508	polyp at pH7 9	not recorded	not recorded	not recorded	-	22.09
SRR11359496	polyp at pH7 9	not recorded	not recorded	not recorded	-	19.73
SRR11359497	polyp at pH7 9	not recorded	not recorded	not recorded	-	16.61
SRR11359500	polyp at pH7 6	not recorded	not recorded	not recorded	-	82.45
SRR11359501	polyp at pH7 6	not recorded	not recorded	not recorded	-	77.87
SRR11359528	polyp at pH7 6	not recorded	not recorded	not recorded	-	56.21
SRR11359512	polyp at pH7 6	not recorded	not recorded	not recorded	-	54.60
SRR11359529	polyp at pH7 6	not recorded	not recorded	not recorded	-	52.85
SRR11359524	polyp at pH7 6	not recorded	not recorded	not recorded	-	49.68
SRR11359513	polyp at pH7 6	not recorded	not recorded	not recorded	-	47.19
SRR11359525	polyp at pH7 6	not recorded	not recorded	not recorded	-	45.97
SRR11359515	polyp at pH7 6	not recorded	not recorded	not recorded	-	45.26
SRR11359514	polyp at pH7 6	not recorded	not recorded	not recorded	-	43.28
SRR11359526	polyp at pH7 6	not recorded	not recorded	not recorded	-	39.76
SRR11359527	polyp at pH7 6	not recorded	not recorded	not recorded	-	39.65
SRR11359505	polyp at pH7 6	not recorded	not recorded	not recorded	-	37.73
SRR11359504	polyp at pH7 6	not recorded	not recorded	not recorded	-	35.69
SRR11359517	polyp at pH7 6	not recorded	not recorded	not recorded	-	29.19
SRR11359516	polyp at pH7 6	not recorded	not recorded	not recorded	-	28.79
SRR11359503	polyp at pH7 6	not recorded	not recorded	not recorded	-	27.09
SRR11359502	polyp at pH7 6	not recorded	not recorded	not recorded	-	25.33
SRR16705990	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	72.88
SRR16705989	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	65.37
SRR16705965	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	64.04
SRR16705973	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	60.26
SRR16705943	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	53.75
SRR16705991	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	42.66
SRR16705970	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	42.25
SRR16705946	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	38.86
SRR16705975	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	37.29
SRR16705992	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	34.51
SRR16705957	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	32.99
SRR16705972	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	24.99
SRR16705942	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	22.30
SRR16705974	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	21.72
SRR16705960	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	21.47
SRR16705971	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	18.96
SRR16705948	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	85.50
SRR16705997	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	81.98
SRR16705945	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	73.94
SRR16705976	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	55.19
SRR16705995	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	54.82
SRR16706005	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	47.41
SRR16705993	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	46.86
SRR16705947	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	44.67
SRR16705977	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	39.58
SRR16705979	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	29.07
SRR16705994	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	27.19
SRR16705944	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	25.66
SRR16705978	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	23.75
SRR16706004	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	22.97
SRR16705982	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	12.04
SRR16705996	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	1.56
SRR16705981	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	146.74
SRR16705950	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	92.63
SRR16705984	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	75.59
SRR16705980	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	71.35
SRR16705961	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	66.09
SRR16705964	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	57.03
SRR16705952	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	54.58
SRR16705983	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	51.83
SRR16705951	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	45.14
SRR16705999	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	40.16
SRR16706001	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	35.27
SRR16705949	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	27.15
SRR16705963	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	26.90
SRR16706000	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	22.86
SRR16705998	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	18.25
SRR16705962	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	11.98
SRR16705966	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	76.22
SRR16705954	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	59.18
SRR16706002	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	42.18
SRR16705988	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	39.66
SRR16705953	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	39.40
SRR16706003	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	39.28
SRR16705968	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	38.05
SRR16705967	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	36.87
SRR16705986	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	34.72
SRR16705956	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	27.98
SRR16705959	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	26.45
SRR16705969	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	24.68
SRR16705985	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	17.22
SRR16705955	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	15.65
SRR16705958	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	13.24
SRR16705987	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	5.63
SRR23025709	Polyp	not recorded	not recorded	not recorded	-	87.30
SRR23025711	Polyp	not recorded	not recorded	not recorded	-	47.92
SRR23025712	Polyp	not recorded	not recorded	not recorded	-	41.08
SRR23025708	Polyp	not recorded	not recorded	not recorded	-	30.26
SRR7746668	Polyp	not recorded	not recorded	not recorded	-	22.61
SRR7746669	Polyp	not recorded	not recorded	not recorded	-	13.88
SRR23025710	Polyp	not recorded	not recorded	not recorded	-	13.24
SRR7746667	Polyp	not recorded	not recorded	not recorded	-	12.22
SRR7746666	Polyp	not recorded	not recorded	not recorded	-	12.21
SRR23025713	Polyp	not recorded	not recorded	not recorded	-	7.06

Source: CnidoSite RNA-seq expression matrices (LPERT_TPM, StringTie quantification over 110 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.