Gene detail

Detailed information of OS493_030901-T1 in Lophelia pertusa

Genomic Location: scaffold_205:334934...360408
NR annotation: KAJ7389516.1, Swi SNF matrix associated, actin dependent regulator of chromatin [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

OS493_030901-T1

ATGGGACTTGGAAAAACCCTCCAAGCAATAAGCATTGCATATTATTACCGAGATGTCTGGCCGCTGTTGATCGTGGCACCATCTTCTGTAAAGTTCTCTTGGATTGATGAAATTGAGAAATGGCTACCTGACGTTGAACCCCATAACTTGAACCTAATTAGATCTGGCAGTGATATCAGCAACCTTGGCAAAGCTATGATTCATGTTGTTGGGTATGGCCTGTTGTCACGCCTAAGCACCTCTAAACTCTTACTGGAAGCCCTGGAAAGCCACAAGTTTAATATTGTTATAGTAGATGAATCACATTACTTGAAGACCAAACGTGCCGCCCGCACACAGCGACTCCATCAACTGTGCAAGAAGGCCCCGCATGCAATTCTGTTGAGTGGGACACCGTCACTTGCACGACCAAGGGAGCTGTATTTCCAGCTTGACATAGTTTGTCCAGGGAAGTTTGGCAATTTCAACAATTTTGTTCAACATTATTGTGATGCACATGATGTTTACTTTCGAGGAGCACGTCATTTTGACACCAGTGGTGCGTCTAACCTAAATGAACTTTATTACCTTCTGAAGACACATGTTATGATACGGAGACTTAAGAAAGAGGTTTTGACGCAGCTGCCACCAAAGAGAAGACAAAAAGTGATTTTTGACATCTCAGAATCTGGCACCAGTCAATACAAGAAGGAGCTGGAACAAACGATGAAAGACTTCAAGAAATGCTCTGCCATTCTGAGAGGCGATGCTGAAGATCCAAGCATCAAGTCACCTATGTTTGAAATGAACCGACTATCAAGTCAACTTTATCGCTATACTGGCCTTGTAAAGGATTTAGTTCGTTCATTTCAAACTGACCCCCAAGTACGCATTGCAGCCCTGTCCATTGAAGCTGCTTCTTTTGGCCTCACTCTAACTGCAGCCCATCATGTAGTTTTTGCCGAGCTTTACCACACCCCAGGTGTGATTATTCAGGCAGAAGACAGAGCACACAGGATAGGACAGACATTACCTGTTAATGTTCACTATCTGATTGCACAAGGCACTGTGGATGAGATTCTTTGGTCTATGATCAGACGCAAGGTCTATGTCACCAGTAGCACTCTTGATGGAGAATGTAAAGAGCTTACAGCAGATGATGCAGACGAGGACCAGAGTCGACAATTGTCTGCGTGTGCTGCCTGGGTACAAGACCAGGAAGAAGATGCTGACGGCCTGGAGGAGTTTGTTATGGAGCAGTGCCACATGCATGAAACTGGAGGTAACTTCAAAACATTTTGTTCTATCATAGCTTTCATCAAAATCTCTAAAAAAGGATCAGAGCCAAAGAGACCTTCGTTCGTTTTTGCCGCAACTCCAAGTGCATCACAGTCAAACTCTTTGGAGCATAAGATTGGACATCAACATGAAGACGGTACTAGAAAGAACATTGTGGATCAGGGTGTGGCCACGACATCCAGGGATACGGTAGTATCTGTGTTAGACAGTGACGAGGACGATTTCTCAGCGTGGGATGATGTGGATGACGACATCCTGATTTCAGAAGGTACATTTAGGCTGCGTTCGTATCTGATTCACTGGAAATCGTGGAGCAGACGACGCTTGACAAACACAATCAACCTCGTGAAGAGAATCTACAAGAGGCTGACAATCTTGAAACTGGACTCAAACCTGTTGAAACTGGACCAAAAACTGTTGAAACTGGACTCAAACCCGTTGAAACTGGACTCAAACCTGTCGAAAACTAGACTCAAACCTGTTGAAACTGGACTCAAACCTGTCGAAATTGGACTCAAACCTGTTGAAACTGGTCTCAAACCAGTTGAAACTGGACTAAAACCTGTCGAAACTGGACTCAAACCTGTTGAAACTGGACTCAAACCTGTAGCAAAGCTGGAGCAATCACTCGAAGAGGAGCAATGTCCACTTAAACCGAAAAGGTTAAAGTTCAAGAAAGTGAAAGATGGCAAGCTTTCTTTCTCGGGAAGCAAAAACTACACTAAGCTTCCTCGCAAGGAAAGCAACTGTATAAGTCCTTTGAAATTTGTTGGAAATTATCCCGAGTCGGAATCACAGACGTTGCGAAGCTATTTAGATGAGGATTGCGATCCTGTAACTGTCAAAGCAGAGCAGAGAGATGATTCAAGCGAGGTTGTCTGTAGTAGTGACGATTCTAGGCAAAAGGACCGTGCTTTTTTCGCATCCTTACAGGACGCTGATATAGAATGTGTTGCAGTTGTTTGTAAAAGGACGACAAACATATTACAAAACAAATCCCACATTTTAGATGACAGTGCTTGTGAAATTACAAAACAAGAAGCAAATTATGGAATTGATGATTGTCAAGTTGAAGAAAGACAAGACCTCGAGAAAGAAGCGGCTTCAAATGCAATTAAAGTTGACATGTTTGACACACCAGGGGAGGCCTTAGAGAGCGTCATTCCCAAAGCTAAAAGCTTGCCCGATCCCAGTTGCAAGCTGGAAAGTGAAGAAGAAAGGACCTCTCCTAGAAAGTCCTATTCCGGACAGAGCCATTGTTTAGATGGAAACTGCCAACAGATGGAGACAGATGAAGTAGGAAATTGCCGTCCAAGTTGTAACCAAGGACAGGGACGTTTGAGTAGAGGGGTTTGCACCAAGGATGACGTCTTAAATCAGATTGACTTTGTTACTAAAAATAAAGATGACCTTGTCCCAATGAGCGCACTCACCAAGACCAGTGGTGGAAGCATTTCCAATGATGTTGAATCTACCCGTATTGACGGCGAGGACATGGTCACAGATAAAGGCGATGTGGGTCAGAGTAGCAAACGTCCAGGAGATGGGAGTGAAGATAATTGTTGTAATATGCCATCATTAGAAGAAAACGTAGGAAGCAGTAGTGTTCACAATTCCTCAAATTCAGCAAAGTGCTTCTCGCGGAATGATAAGGAAAAATCGCAGAATAAAACAGATGAGGTGGAAGCCAACGTGGTATCTGTTTGCATTGACGATGATTCCTCTGATGATTTTCAAGTTTCCAGCATCAGGAATACCCAGGTGGCTCCACTACCAGCTGCACAGAAACCAAGCAAGGCAAAAAAACGAAAGGCCACTAAGAAATCCAAGAACAAAACAGCAACTGGAGGAGTTAGGAATCGTAATAATGTCAAGAAGCCGCCTGTTAACTGGTCTTGCAGCGCTTGTACTTTTATTAATGATGGGCAGCTGTTGGAATGTTCCGTTTGCCTCACACCACGTGCTACAACTGAGGACGAGAAAACGTGCATTCCTAAAAGTACAGATTTGGGTTTTGAGATTTCGATTGAGCAAAGTTGCGATGATGTTGAAATGGTAGAAGATGCAGGTGTTTTAGAAGACTTTAAAAGTATCAATTCCGTTATTGAAAATGGTGGCATAAATGCTACGATAGTGAAACACGACATGTTATTAGACGGTATCGATGGGTCAGCTAGTAATGACACTGGGCATACTGCAGAATTACCCGATAGCACTATAGTCGTCCATGGCTTGTCAACTGAGTCAAAGGGAACACCGACAGACGTGTCGAAGACAACTGATAACTCCACTATTCCCAAGCAGGAAACAGCTGTTGATGTTTCTGACAATAGTCAGGTCGTTGAGCCTGCCTTGCCTCCTTGGACTTGCACCGCTTGCACGTTCTTGAACATGTCACAAATGATTGAATGCTCAATATGTATGACTCCTAGAAGACGAAGTCAGAGGCTGAGTGCAACTAAGACTACATGTACATTTACATGCACAGTGGCAGCCAAAGGATGGGAGAAGGATTGCATTAACAAGAACAAATCAAGCAAGAGAAGGCGATGGGAAGGAGACAAGATGAAGAAAGACGACAACCCACAAGACATAGGAGTAAACATGGTTAGTAGTTCATTTACATGTATCGATGAGTCCAGTGCCGGCAACAGCATATCACATTGTGATCATGACATTTCAATAGCAGACAATGATAGCTTGACACCAGAACCTGTGGAGTCAACCCATGATACAGACAGTGTTCAGGCACATGGTGGTTTACAAGTAGACTCGAGTGAAGATAGTTCTGGTGGCATTAAGCCTAAGCCGCGGAAACGTCTTAGACTCGAAGAGGTTGAAGCGGACAGCAGTATGACCGAGGACATTGGCGATTTTTCAGATGATTCAGATGTTGTATGCGACAACAGAACATTCACATGTCCTTCATCAGTTTCTTCTTCTACAGCTCAGAGAGAGTCGGTATCGGATATACCATTTGATGGCAAAGACATAACTAGTTCAGACGACTGTGTTCTTTCCACAGATGAGGATAAAAAAGGAGCCACAACTCATCAAAAACATGCACTCAACAACTGTCAAATTGACAAGAATGATTTCGAGGTATATTGTGACATATCCGGTGTTAAAGTTTCAGATGACGTTGAAGCTATTGACTGCAGTGCAGTACCTTTACCTGTGTCCTCTTCTGAAGTTACCTTTAGTGCAAATTCGTCACCACGTTTACAGTCTGGTAGCAAAGTGGTGGAAAATCTCGACGAATTGAAAGCCGCCGCGGAAGCAGTGTTCATGTCTGAATGGGAAGATGACGATGAGTGGTGGGAAGAAGCAGAAAGTTGTTCTGGGCAGAGCTCCTTTCCTTCCAGTAGTGAAACAGCATCTGTTAGTCCAACAGTTCCGAGCCCAGGGTTCACAAAATGCTCGGATCTTTATTCTGTCACTGAGCTAAAGAACAAGCTACAAACAACTCCTGAGGCATGCACCACAACAGCTGTAGACAATGTTCAACAGGTTCAACTTGCCGAAGGTAATCCTGACAACGACATGTCATCATCGTTGGCAAATCAATATACATTTATGCCTGATACTGCTCCAGTAATAGAAGAAGAGGAGGCAGAGGAACCAGAAGATGTTCCAGAAGCCATGAAGTTGAAGTTTTGTTTGAGTCTTTATACCGAACGGGTATATTTGTACAACGAGGACGACAGACCGCTTGGAGTTAATTTCTGCATGTCGGACGTGAAGAACTGCAACATGGACGATTTGCCCGCCATCCTTCGTCACGATGAAAATCTGAGACAAGTGAAAAGGTTTCTTGGCTTGTGGAATAGGATGGGACAAGGGAAGAAGCGAGTCCTTCGCAAATCAGCGCTTGTATTTGATAATCCTTTGGAAGCCTACGAATGTGCAAGGAAGGAAACTCAAATTCAAAACATCATCGATACCGCAGGAGAAATTGGAGGAAAGGTTCGTGTAGTTAAGAGACCAAGGATTACAGCGAAGAGAAGAAACAGAAGAAATGATCGCAGCAAGGAGACAAACAGCGGTCAGTCATCACTCACTCCTTCCCTGTCGGGAAGCGCAGCATCTACTAACACCACCCAAGAGCGTCCCTCAAGCACAGCATCCAAGGACAAGACTTGCTACCAAGCCGTGAGGGCTGATGGGATACCATTATGTCTGTCCTGCTCGGGTCCAGTGGATTTTGTGGACAAAATGAAATGCTCTGATTGGGATGCAAGATTTTGTTCGTATGATTGCAAAAAAGAATACCAGGTTCGTGTCAGCGGTACAGCTGCAAGGAGGGCGCTGTTTGAATCAGAACGAGGCATCTGCCAGCTGTGTCTGTTGGATGCTCACAGCTTGTACCACAACATCACTGTGCTGGACGTCAGAGATCGGCCAGCATTCTTAGCGCAGACTCCTTATTCGTCACTGCCGCAACAGATGTTGAAGAAAATGGTTATGGATCCAAAAGAAGGAATGTTCTGGGAGGCGGACCACATTACACCCGTGTCTGAGGGGGGCGGGGAGTGTGCATTGGACAACTACAGGACCCTGTGCGTCATGTGCCACAGGAAGGCCACTGGTGAATTGAACATGAGGCTGAAACAACGCAGAGTTCTACAACACGCTGCTGGGTATGCAGATATATCCACATTCTTTCGACCACTGAACTAA

Transcript

OS493_030901-T1

Protein

OS493_030901-T1

MGLGKTLQAISIAYYYRDVWPLLIVAPSSVKFSWIDEIEKWLPDVEPHNLNLIRSGSDISNLGKAMIHVVGYGLLSRLSTSKLLLEALESHKFNIVIVDESHYLKTKRAARTQRLHQLCKKAPHAILLSGTPSLARPRELYFQLDIVCPGKFGNFNNFVQHYCDAHDVYFRGARHFDTSGASNLNELYYLLKTHVMIRRLKKEVLTQLPPKRRQKVIFDISESGTSQYKKELEQTMKDFKKCSAILRGDAEDPSIKSPMFEMNRLSSQLYRYTGLVKDLVRSFQTDPQVRIAALSIEAASFGLTLTAAHHVVFAELYHTPGVIIQAEDRAHRIGQTLPVNVHYLIAQGTVDEILWSMIRRKVYVTSSTLDGECKELTADDADEDQSRQLSACAAWVQDQEEDADGLEEFVMEQCHMHETGGNFKTFCSIIAFIKISKKGSEPKRPSFVFAATPSASQSNSLEHKIGHQHEDGTRKNIVDQGVATTSRDTVVSVLDSDEDDFSAWDDVDDDILISEGTFRLRSYLIHWKSWSRRRLTNTINLVKRIYKRLTILKLDSNLLKLDQKLLKLDSNPLKLDSNLSKTRLKPVETGLKPVEIGLKPVETGLKPVETGLKPVETGLKPVETGLKPVAKLEQSLEEEQCPLKPKRLKFKKVKDGKLSFSGSKNYTKLPRKESNCISPLKFVGNYPESESQTLRSYLDEDCDPVTVKAEQRDDSSEVVCSSDDSRQKDRAFFASLQDADIECVAVVCKRTTNILQNKSHILDDSACEITKQEANYGIDDCQVEERQDLEKEAASNAIKVDMFDTPGEALESVIPKAKSLPDPSCKLESEEERTSPRKSYSGQSHCLDGNCQQMETDEVGNCRPSCNQGQGRLSRGVCTKDDVLNQIDFVTKNKDDLVPMSALTKTSGGSISNDVESTRIDGEDMVTDKGDVGQSSKRPGDGSEDNCCNMPSLEENVGSSSVHNSSNSAKCFSRNDKEKSQNKTDEVEANVVSVCIDDDSSDDFQVSSIRNTQVAPLPAAQKPSKAKKRKATKKSKNKTATGGVRNRNNVKKPPVNWSCSACTFINDGQLLECSVCLTPRATTEDEKTCIPKSTDLGFEISIEQSCDDVEMVEDAGVLEDFKSINSVIENGGINATIVKHDMLLDGIDGSASNDTGHTAELPDSTIVVHGLSTESKGTPTDVSKTTDNSTIPKQETAVDVSDNSQVVEPALPPWTCTACTFLNMSQMIECSICMTPRRRSQRLSATKTTCTFTCTVAAKGWEKDCINKNKSSKRRRWEGDKMKKDDNPQDIGVNMVSSSFTCIDESSAGNSISHCDHDISIADNDSLTPEPVESTHDTDSVQAHGGLQVDSSEDSSGGIKPKPRKRLRLEEVEADSSMTEDIGDFSDDSDVVCDNRTFTCPSSVSSSTAQRESVSDIPFDGKDITSSDDCVLSTDEDKKGATTHQKHALNNCQIDKNDFEVYCDISGVKVSDDVEAIDCSAVPLPVSSSEVTFSANSSPRLQSGSKVVENLDELKAAAEAVFMSEWEDDDEWWEEAESCSGQSSFPSSSETASVSPTVPSPGFTKCSDLYSVTELKNKLQTTPEACTTTAVDNVQQVQLAEGNPDNDMSSSLANQYTFMPDTAPVIEEEEAEEPEDVPEAMKLKFCLSLYTERVYLYNEDDRPLGVNFCMSDVKNCNMDDLPAILRHDENLRQVKRFLGLWNRMGQGKKRVLRKSALVFDNPLEAYECARKETQIQNIIDTAGEIGGKVRVVKRPRITAKRRNRRNDRSKETNSGQSSLTPSLSGSAASTNTTQERPSSTASKDKTCYQAVRADGIPLCLSCSGPVDFVDKMKCSDWDARFCSYDCKKEYQVRVSGTAARRALFESERGICQLCLLDAHSLYHNITVLDVRDRPAFLAQTPYSSLPQQMLKKMVMDPKEGMFWEADHITPVSEGGGECALDNYRTLCVMCHRKATGELNMRLKQRRVLQHAAGYADISTFFRPLN

UniProt (Swiss-Prot top hit)

UniProt accession	Description
E1BB03	DNA annealing helicase and endonuclease ZRANB3 OS=Bos taurus OX=9913 GN=ZRANB3 PE=3 SV=3
Q6NZP1	DNA annealing helicase and endonuclease ZRANB3 OS=Mus musculus OX=10090 GN=Zranb3 PE=1 SV=1
Q5FWF4	DNA annealing helicase and endonuclease ZRANB3 OS=Homo sapiens OX=9606 GN=ZRANB3 PE=1 SV=2

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0001424 (this species only)
Ubiquitin family	UBD\|ZnF\|NZF · all ubiquitin genes in this species

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00176 all species →	SNF2-rel_dom	SNF2-related domain	Domain	Interproscan
PF01844 all species →	HNH	HNH endonuclease	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR014001 all species →	Domain	Helicase superfamily 1/2, ATP-binding domain	Interproscan
IPR001876 all species →	Domain	Zinc finger, RanBP2-type	Interproscan
IPR000330 all species →	Domain	SNF2, N-terminal	Interproscan
IPR049730 all species →	Domain	SNF2/RAD5-like, C-terminal helicase domain	Interproscan
IPR027417 all species →	Homologous_superfamily	P-loop containing nucleoside triphosphate hydrolase	Interproscan
IPR002711 all species →	Domain	HNH endonuclease	Interproscan
IPR038718 all species →	Homologous_superfamily	SNF2-like, N-terminal domain superfamily	Interproscan
IPR003615 all species →	Domain	HNH nuclease	Interproscan
IPR036443 all species →	Homologous_superfamily	Zinc finger, RanBP2-type superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR45766 all species →	DNA ANNEALING HELICASE AND ENDONUCLEASE ZRANB3 FAMILY MEMBER	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0006281 all species →	Biological Process	DNA repair	Interproscan
GO:0031297 all species →	Biological Process	replication fork processing	Interproscan
GO:0048478 all species →	Biological Process	obsolete replication fork protection	Interproscan
GO:0005524 all species →	Molecular Function	ATP binding	Interproscan
GO:0140658 all species →	Molecular Function	ATP-dependent chromatin remodeler activity	Interproscan
GO:0003676 all species →	Molecular Function	nucleic acid binding	Interproscan
GO:0004519 all species →	Molecular Function	endonuclease activity	Interproscan
GO:0008270 all species →	Molecular Function	zinc ion binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for OS493_030901-T1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern

Expression trend for OS493_030901-T1 global co-expression network