Gene detail

Detailed information of OS493_030936-T1 in Lophelia pertusa

Genomic Location: scaffold_206:46862...48316
NR annotation: KAJ7383051.1, hypothetical protein OS493_030936 [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q76DT2	DELTA-thalatoxin-Avl2a OS=Actineria villosa OX=227975 PE=1 SV=1
P58911	DELTA-alicitoxin-Pse2a OS=Phyllodiscus semoni OX=163701 PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0000877 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF01823 all species →	MACPF	MAC/Perforin domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR020864 all species →	Domain	Membrane attack complex component/perforin (MACPF) domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR45742 all species →	COMPLEMENT COMPONENT C6	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005615 all species →	Cellular Component	extracellular space	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for OS493_030936-T1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of OS493_030936-T1 across 110 RNA-seq samples of Lophelia pertusa. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

110Samples

110TPM > 0

7Conditions

649.5Max TPM

49.0Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
polyp at pH7 9	18	18	57.16	154.44
polyp at pH7 6	18	18	160.98	649.45
coral polyp · control treatment	16	16	15.35	67.79
coral polyp · oil and dispersant treatment	16	16	19.60	136.36
coral polyp · oil treatment	16	16	42.31	263.79
coral polyp · dispersant treatment	16	16	10.69	51.64
Polyp	10	10	5.81	15.25

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR11359509	polyp at pH7 9	not recorded	not recorded	not recorded	-	154.44
SRR11359508	polyp at pH7 9	not recorded	not recorded	not recorded	-	150.29
SRR11359506	polyp at pH7 9	not recorded	not recorded	not recorded	-	105.36
SRR11359507	polyp at pH7 9	not recorded	not recorded	not recorded	-	104.84
SRR11359494	polyp at pH7 9	not recorded	not recorded	not recorded	-	96.66
SRR11359495	polyp at pH7 9	not recorded	not recorded	not recorded	-	78.88
SRR11359518	polyp at pH7 9	not recorded	not recorded	not recorded	-	51.09
SRR11359519	polyp at pH7 9	not recorded	not recorded	not recorded	-	48.55
SRR11359496	polyp at pH7 9	not recorded	not recorded	not recorded	-	44.62
SRR11359497	polyp at pH7 9	not recorded	not recorded	not recorded	-	42.03
SRR11359510	polyp at pH7 9	not recorded	not recorded	not recorded	-	33.01
SRR11359511	polyp at pH7 9	not recorded	not recorded	not recorded	-	30.18
SRR11359521	polyp at pH7 9	not recorded	not recorded	not recorded	-	25.81
SRR11359520	polyp at pH7 9	not recorded	not recorded	not recorded	-	24.56
SRR11359523	polyp at pH7 9	not recorded	not recorded	not recorded	-	18.64
SRR11359522	polyp at pH7 9	not recorded	not recorded	not recorded	-	17.62
SRR11359498	polyp at pH7 9	not recorded	not recorded	not recorded	-	1.43
SRR11359499	polyp at pH7 9	not recorded	not recorded	not recorded	-	0.78
SRR11359513	polyp at pH7 6	not recorded	not recorded	not recorded	-	649.45
SRR11359500	polyp at pH7 6	not recorded	not recorded	not recorded	-	647.58
SRR11359501	polyp at pH7 6	not recorded	not recorded	not recorded	-	637.98
SRR11359512	polyp at pH7 6	not recorded	not recorded	not recorded	-	619.62
SRR11359527	polyp at pH7 6	not recorded	not recorded	not recorded	-	50.74
SRR11359526	polyp at pH7 6	not recorded	not recorded	not recorded	-	47.11
SRR11359514	polyp at pH7 6	not recorded	not recorded	not recorded	-	45.23
SRR11359515	polyp at pH7 6	not recorded	not recorded	not recorded	-	44.98
SRR11359503	polyp at pH7 6	not recorded	not recorded	not recorded	-	29.31
SRR11359502	polyp at pH7 6	not recorded	not recorded	not recorded	-	29.29
SRR11359524	polyp at pH7 6	not recorded	not recorded	not recorded	-	16.89
SRR11359525	polyp at pH7 6	not recorded	not recorded	not recorded	-	15.97
SRR11359529	polyp at pH7 6	not recorded	not recorded	not recorded	-	15.44
SRR11359528	polyp at pH7 6	not recorded	not recorded	not recorded	-	14.97
SRR11359504	polyp at pH7 6	not recorded	not recorded	not recorded	-	9.83
SRR11359505	polyp at pH7 6	not recorded	not recorded	not recorded	-	9.62
SRR11359517	polyp at pH7 6	not recorded	not recorded	not recorded	-	7.32
SRR11359516	polyp at pH7 6	not recorded	not recorded	not recorded	-	6.24
SRR16705990	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	67.79
SRR16705972	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	54.09
SRR16705970	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	37.30
SRR16705989	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	23.55
SRR16705965	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	18.51
SRR16705973	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	16.37
SRR16705974	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	12.07
SRR16705942	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	7.59
SRR16705943	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	2.76
SRR16705960	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	1.53
SRR16705971	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	1.48
SRR16705946	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	1.39
SRR16705992	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	0.57
SRR16705957	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	0.30
SRR16705991	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	0.22
SRR16705975	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	0.15
SRR16705976	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	136.36
SRR16705994	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	57.20
SRR16705977	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	43.89
SRR16705944	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	35.68
SRR16705947	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	8.82
SRR16705945	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	6.63
SRR16705948	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	6.35
SRR16705995	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	5.32
SRR16705993	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	5.27
SRR16705978	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	4.56
SRR16705979	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	0.93
SRR16706005	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	0.64
SRR16705996	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	0.60
SRR16705997	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	0.47
SRR16705982	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	0.43
SRR16706004	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	0.41
SRR16705950	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	263.79
SRR16705961	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	184.69
SRR16706001	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	73.91
SRR16705980	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	34.10
SRR16705949	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	33.31
SRR16705981	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	29.45
SRR16705983	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	13.47
SRR16705999	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	12.84
SRR16705964	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	10.99
SRR16705951	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	8.05
SRR16705963	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	5.34
SRR16705962	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	4.56
SRR16705998	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	0.98
SRR16706000	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	0.61
SRR16705952	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	0.44
SRR16705984	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	0.37
SRR16705954	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	51.64
SRR16705966	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	37.92
SRR16705968	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	28.08
SRR16705953	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	28.00
SRR16705967	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	11.95
SRR16705959	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	3.31
SRR16705985	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2.72
SRR16705955	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2.61
SRR16705987	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.43
SRR16705986	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.05
SRR16705969	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.90
SRR16706002	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.77
SRR16706003	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.39
SRR16705988	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.27
SRR16705956	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.05
SRR16705958	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.02
SRR7746666	Polyp	not recorded	not recorded	not recorded	-	15.25
SRR7746669	Polyp	not recorded	not recorded	not recorded	-	14.15
SRR23025709	Polyp	not recorded	not recorded	not recorded	-	13.11
SRR7746668	Polyp	not recorded	not recorded	not recorded	-	8.03
SRR23025708	Polyp	not recorded	not recorded	not recorded	-	3.03
SRR7746667	Polyp	not recorded	not recorded	not recorded	-	2.88
SRR23025712	Polyp	not recorded	not recorded	not recorded	-	0.80
SRR23025713	Polyp	not recorded	not recorded	not recorded	-	0.42
SRR23025711	Polyp	not recorded	not recorded	not recorded	-	0.28
SRR23025710	Polyp	not recorded	not recorded	not recorded	-	0.20

Source: CnidoSite RNA-seq expression matrices (LPERT_TPM, StringTie quantification over 110 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.